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Magnesium in PDB 1v71: Crystal Structure of S.Pombe Serine Racemase

Protein crystallography data

The structure of Crystal Structure of S.Pombe Serine Racemase, PDB code: 1v71 was solved by M.Goto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.70
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 69.470, 148.170, 64.200, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 24.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of S.Pombe Serine Racemase (pdb code 1v71). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of S.Pombe Serine Racemase, PDB code: 1v71:

Magnesium binding site 1 out of 1 in 1v71

Go back to Magnesium Binding Sites List in 1v71
Magnesium binding site 1 out of 1 in the Crystal Structure of S.Pombe Serine Racemase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of S.Pombe Serine Racemase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg360

b:16.3
occ:1.00
OD1 A:ASP214 2.3 22.9 1.0
OE2 A:GLU208 2.4 24.4 1.0
O A:HOH417 2.4 19.9 1.0
O A:GLY212 2.4 26.7 1.0
O A:HOH376 2.4 20.8 1.0
O A:HOH400 2.5 21.2 1.0
CG A:ASP214 3.3 21.6 1.0
CD A:GLU208 3.3 24.9 1.0
C A:GLY212 3.5 27.6 1.0
OD2 A:ASP214 3.6 21.2 1.0
CG A:GLU208 3.9 23.7 1.0
N A:ASP214 4.0 24.1 1.0
O A:ALA237 4.1 20.2 1.0
O A:THR239 4.1 22.4 1.0
N A:GLY215 4.2 24.1 1.0
CB A:GLU208 4.2 22.1 1.0
OE1 A:GLU208 4.2 24.5 1.0
CA A:GLY212 4.3 27.2 1.0
N A:ASN213 4.4 27.0 1.0
CB A:ASP214 4.5 22.1 1.0
O A:GLY183 4.5 18.5 1.0
CA A:ASN213 4.5 27.0 1.0
O A:LEU182 4.6 17.8 1.0
C A:ASN213 4.6 26.4 1.0
CA A:ASP214 4.7 23.6 1.0
CD A:PRO209 4.8 21.6 1.0
C A:ASP214 5.0 23.6 1.0

Reference:

M.Goto, M.Goto. N/A N/A.
Page generated: Mon Dec 14 06:54:06 2020

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