Magnesium in PDB 1v8k: The Crystal Structure of the Minimal Functional Domain of the Microtubule Destabilizer KIF2C Complexed with Mg-Amppnp

The structure of The Crystal Structure of the Minimal Functional Domain of the Microtubule Destabilizer KIF2C Complexed with Mg-Amppnp, PDB code: 1v8k was solved by T.Ogawa, R.Nitta, Y.Okada, N.Hirokawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.94 / 2.25
Space group	C 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	61.068, 191.475, 74.627, 90.00, 90.00, 90.00
R / Rfree (%)	21.5 / 25.2

The binding sites of Magnesium atom in the The Crystal Structure of the Minimal Functional Domain of the Microtubule Destabilizer KIF2C Complexed with Mg-Amppnp (pdb code 1v8k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of the Minimal Functional Domain of the Microtubule Destabilizer KIF2C Complexed with Mg-Amppnp, PDB code: 1v8k:

Magnesium binding site 1 out of 1 in the The Crystal Structure of the Minimal Functional Domain of the Microtubule Destabilizer KIF2C Complexed with Mg-Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of the Minimal Functional Domain of the Microtubule Destabilizer KIF2C Complexed with Mg-Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:41.5 occ:1.00 OG1 A:THR169 2.1 31.8 1.0 O1B A:ANP500 2.1 31.1 1.0 O A:HOH668 2.1 40.0 1.0 O A:HOH667 2.2 43.4 1.0 O2G A:ANP500 2.3 48.1 1.0 O A:HOH673 2.3 44.6 1.0 PB A:ANP500 3.2 34.1 1.0 CB A:THR169 3.2 34.2 1.0 PG A:ANP500 3.3 54.7 1.0 N3B A:ANP500 3.4 34.1 1.0 N A:THR169 3.8 38.3 1.0 O3G A:ANP500 3.8 48.5 1.0 O3A A:ANP500 3.9 29.2 1.0 CA A:THR169 4.0 33.0 1.0 PA A:ANP500 4.1 44.0 1.0 OD2 A:ASP306 4.1 33.6 1.0 OD1 A:ASP306 4.2 31.3 1.0 CG2 A:THR169 4.3 34.7 1.0 O1A A:ANP500 4.3 43.4 1.0 NH1 A:ARG270 4.4 54.7 1.0 N A:SER282 4.5 84.9 1.0 C A:SER281 4.5 84.9 1.0 O2B A:ANP500 4.6 43.1 1.0 CG A:ASP306 4.6 35.5 1.0 CB A:LYS168 4.6 25.5 1.0 O1G A:ANP500 4.6 59.4 1.0 CA A:SER282 4.7 84.1 1.0 O A:SER281 4.8 84.9 1.0 C A:LYS168 4.8 33.4 1.0 CE A:LYS168 4.9 25.9 1.0 OD1 A:ASN280 4.9 84.9 1.0 CA A:SER281 4.9 84.0 1.0 N A:SER281 4.9 84.9 1.0

T.Ogawa, R.Nitta, Y.Okada, N.Hirokawa. A Common Mechanism For Microtubule Destabilizers-M Type Kinesins Stabilize Curling of the Protofilament Using the Class-Specific Neck and Loops. Cell(Cambridge,Mass.) V. 116 591 2004.
ISSN: ISSN 0092-8674
PubMed: 14980225
DOI: 10.1016/S0092-8674(04)00129-1