Magnesium in PDB 1v98: Crystal Structure Analysis of Thioredoxin From Thermus Thermophilus

All present enzymatic activity of Crystal Structure Analysis of Thioredoxin From Thermus Thermophilus:
1.8.1.9;

The structure of Crystal Structure Analysis of Thioredoxin From Thermus Thermophilus, PDB code: 1v98 was solved by P.H.Rehse, T.H.Tahirov, Riken Structural Genomics/Proteomics Initiative(Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.80 / 1.82
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	40.910, 95.441, 56.683, 90.00, 91.41, 90.00
R / Rfree (%)	19.5 / 23.6

The binding sites of Magnesium atom in the Crystal Structure Analysis of Thioredoxin From Thermus Thermophilus (pdb code 1v98). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure Analysis of Thioredoxin From Thermus Thermophilus, PDB code: 1v98:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure Analysis of Thioredoxin From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure Analysis of Thioredoxin From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:22.4 occ:1.00 OE2 A:GLU130 2.3 58.8 1.0 NE2 A:HIS79 2.3 38.9 1.0 OE1 A:GLU130 2.5 53.0 1.0 CD A:GLU130 2.7 55.9 1.0 OD2 A:ASP78 2.9 58.7 1.0 CD2 A:HIS79 3.2 32.4 1.0 CE1 A:HIS79 3.3 42.1 1.0 CG A:ASP78 4.0 55.5 1.0 CD2 A:LEU75 4.0 52.1 1.0 CG A:GLU130 4.2 40.9 1.0 CB A:ASP78 4.3 40.7 1.0 CG A:HIS79 4.3 31.4 1.0 O A:HOH696 4.4 59.9 1.0 ND1 A:HIS79 4.4 35.2 1.0 O A:HOH644 4.4 36.3 1.0 O A:HOH684 4.6 47.1 1.0 CB A:GLU130 5.0 34.9 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure Analysis of Thioredoxin From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure Analysis of Thioredoxin From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:31.0 occ:1.00 NE2 B:HIS79 2.2 35.1 1.0 OE1 B:GLU130 2.2 69.4 1.0 OD2 B:ASP78 2.7 49.3 1.0 OE2 B:GLU130 2.8 66.7 1.0 CD B:GLU130 2.8 63.3 1.0 CD2 B:HIS79 3.1 28.9 1.0 CE1 B:HIS79 3.2 29.8 1.0 CG B:ASP78 3.9 45.9 1.0 CD2 B:LEU75 4.1 39.2 1.0 CG B:HIS79 4.2 30.3 1.0 CG B:GLU130 4.3 48.7 1.0 ND1 B:HIS79 4.3 26.8 1.0 CB B:ASP78 4.4 34.8 1.0 OD1 B:ASP78 4.9 48.9 1.0 CB B:GLU130 4.9 34.2 1.0

P.H.Rehse, T.H.Tahirov. Crystallographic Analysis of Thioredoxin From the Thermophilic Bacteria Thermus Thermophilus To Be Published.