Magnesium in PDB 1vg0: The Crystal Structures of the Rep-1 Protein in Complex with Monoprenylated RAB7 Protein

The structure of The Crystal Structures of the Rep-1 Protein in Complex with Monoprenylated RAB7 Protein, PDB code: 1vg0 was solved by A.Rak, O.Pylypenko, A.Niculae, K.Pyatkov, R.S.Goody, K.Alexandrov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.00 / 2.20
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	64.300, 105.300, 132.600, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 23.3

The structure of The Crystal Structures of the Rep-1 Protein in Complex with Monoprenylated RAB7 Protein also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the The Crystal Structures of the Rep-1 Protein in Complex with Monoprenylated RAB7 Protein (pdb code 1vg0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structures of the Rep-1 Protein in Complex with Monoprenylated RAB7 Protein, PDB code: 1vg0:

Magnesium binding site 1 out of 1 in the The Crystal Structures of the Rep-1 Protein in Complex with Monoprenylated RAB7 Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structures of the Rep-1 Protein in Complex with Monoprenylated RAB7 Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg3000 b:27.6 occ:1.00 OG1 B:THR22 1.9 26.8 1.0 O B:HOH5585 2.0 22.8 1.0 O B:HOH5584 2.0 20.7 1.0 O B:HOH5583 2.1 17.3 1.0 O3B B:GDP1557 2.1 28.0 1.0 O B:HOH5586 2.2 23.3 1.0 CB B:THR22 3.2 24.6 1.0 PB B:GDP1557 3.3 27.7 1.0 O1B B:GDP1557 3.7 29.2 1.0 OD2 B:ASP63 4.0 21.9 1.0 N B:THR22 4.0 25.4 1.0 O B:HOH5589 4.0 37.5 1.0 OD1 B:ASP63 4.0 29.0 1.0 O2A B:GDP1557 4.0 33.5 1.0 CA B:THR22 4.2 24.2 1.0 CG2 B:THR22 4.2 20.8 1.0 OG1 B:THR64 4.3 16.0 1.0 O3A B:GDP1557 4.3 28.6 1.0 OE1 B:GLU68 4.3 20.1 1.0 O2B B:GDP1557 4.4 31.5 1.0 CG B:ASP63 4.4 21.5 1.0 PA B:GDP1557 4.6 31.8 1.0 O B:HOH5527 4.8 35.0 1.0 N B:GLY66 4.8 19.4 1.0 O1A B:GDP1557 4.9 27.5 1.0 NZ B:LYS21 4.9 19.4 1.0 O B:HOH5503 4.9 19.9 1.0

A.Rak, O.Pylypenko, A.Niculae, K.Pyatkov, R.S.Goody, K.Alexandrov. Structure of the RAB7:Rep-1 Complex: Insights Into the Mechanism of Rab Prenylation and Choroideremia Disease Cell(Cambridge,Mass.) V. 117 749 2004.
ISSN: ISSN 0092-8674
PubMed: 15186776
DOI: 10.1016/J.CELL.2004.05.017