Magnesium in PDB 1vkp: X-Ray Structure of Gene Product From Arabidopsis Thaliana AT5G08170, Agmatine Iminohydrolase

All present enzymatic activity of X-Ray Structure of Gene Product From Arabidopsis Thaliana AT5G08170, Agmatine Iminohydrolase:
3.5.3.12;

The structure of X-Ray Structure of Gene Product From Arabidopsis Thaliana AT5G08170, Agmatine Iminohydrolase, PDB code: 1vkp was solved by G.E.Wesenberg, D.W.Smith, G.N.Phillips Jr., C.A.Bingman, S.T.M.Allard, Center For Eukaryotic Structural Genomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.88 / 1.53
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	58.020, 115.813, 66.634, 90.00, 97.10, 90.00
R / Rfree (%)	14.6 / 17.4

The binding sites of Magnesium atom in the X-Ray Structure of Gene Product From Arabidopsis Thaliana AT5G08170, Agmatine Iminohydrolase (pdb code 1vkp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the X-Ray Structure of Gene Product From Arabidopsis Thaliana AT5G08170, Agmatine Iminohydrolase, PDB code: 1vkp:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the X-Ray Structure of Gene Product From Arabidopsis Thaliana AT5G08170, Agmatine Iminohydrolase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of Gene Product From Arabidopsis Thaliana AT5G08170, Agmatine Iminohydrolase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:20.1 occ:1.00 OD1 A:ASP119 2.2 16.8 1.0 O A:TRP120 2.3 14.2 1.0 O A:HOH1181 2.4 27.9 1.0 O A:HOH1040 2.5 16.6 1.0 O A:HOH1056 2.5 17.1 1.0 C A:TRP120 3.4 14.7 1.0 CG A:ASP119 3.5 15.1 1.0 N A:TRP120 3.6 13.3 1.0 OG A:SER143 3.6 15.6 1.0 C A:ASP119 3.8 14.0 1.0 O A:HOH1091 3.8 19.6 1.0 CB A:SER143 3.9 13.9 1.0 CA A:ASP119 4.1 12.3 1.0 CA A:TRP120 4.1 13.3 1.0 O A:SER95 4.2 16.2 1.0 O A:HOH1025 4.2 17.9 1.0 OD2 A:ASP119 4.3 19.1 1.0 CB A:ASP119 4.3 13.7 1.0 O A:LEU140 4.4 18.2 1.0 O A:ASP119 4.5 15.3 1.0 N A:ASN121 4.5 15.5 1.0 CB A:TRP120 4.7 13.5 1.0 CA A:ASN121 4.8 14.6 1.0 C A:ASN121 4.9 15.6 1.0 CB A:PHE122 4.9 16.7 1.0 N A:SER143 5.0 11.5 1.0 O A:ASP139 5.0 12.6 1.0

Magnesium binding site 2 out of 2 in the X-Ray Structure of Gene Product From Arabidopsis Thaliana AT5G08170, Agmatine Iminohydrolase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Structure of Gene Product From Arabidopsis Thaliana AT5G08170, Agmatine Iminohydrolase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:19.1 occ:1.00 O B:TRP120 2.3 12.2 1.0 OD1 B:ASP119 2.3 14.1 1.0 O B:HOH986 2.5 23.5 1.0 O B:HOH944 2.5 17.1 1.0 O B:HOH929 2.6 15.9 1.0 C B:TRP120 3.4 12.2 1.0 CG B:ASP119 3.5 16.6 1.0 N B:TRP120 3.6 12.5 1.0 OG B:SER143 3.7 14.3 1.0 O B:HOH973 3.8 19.7 1.0 CB B:SER143 3.8 14.5 1.0 C B:ASP119 3.9 11.9 1.0 CA B:TRP120 4.1 12.1 1.0 CA B:ASP119 4.1 11.5 1.0 O B:HOH1153 4.1 34.6 1.0 O B:HOH922 4.2 15.2 1.0 O B:SER95 4.3 13.9 1.0 O B:LEU140 4.3 16.8 1.0 OD2 B:ASP119 4.4 20.5 1.0 CB B:ASP119 4.4 11.9 1.0 N B:ASN121 4.5 12.6 1.0 O B:ASP119 4.5 13.3 1.0 CB B:PHE122 4.7 16.6 1.0 CB B:TRP120 4.7 12.0 1.0 CA B:ASN121 4.8 14.2 1.0 C B:ASN121 4.8 14.1 1.0 N B:SER143 5.0 11.4 1.0

Center For Eukaryotic Structural Genomics, G.E.Wesenberg, D.W.Smith, G.N.Phillips Jr., C.A.Bingman, S.T.M.Allard, Center For Eukaryotic Structural Genomics (Cesg). N/A N/A.