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Magnesium in PDB 1vl8: Crystal Structure of Gluconate 5-Dehydrogenase (TM0441) From Thermotoga Maritima at 2.07 A Resolution

Enzymatic activity of Crystal Structure of Gluconate 5-Dehydrogenase (TM0441) From Thermotoga Maritima at 2.07 A Resolution

All present enzymatic activity of Crystal Structure of Gluconate 5-Dehydrogenase (TM0441) From Thermotoga Maritima at 2.07 A Resolution:
1.1.1.69;

Protein crystallography data

The structure of Crystal Structure of Gluconate 5-Dehydrogenase (TM0441) From Thermotoga Maritima at 2.07 A Resolution, PDB code: 1vl8 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.67 / 2.07
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 123.504, 123.504, 122.323, 90.00, 90.00, 90.00
R / Rfree (%) 15 / 18

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Gluconate 5-Dehydrogenase (TM0441) From Thermotoga Maritima at 2.07 A Resolution (pdb code 1vl8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Gluconate 5-Dehydrogenase (TM0441) From Thermotoga Maritima at 2.07 A Resolution, PDB code: 1vl8:

Magnesium binding site 1 out of 1 in 1vl8

Go back to Magnesium Binding Sites List in 1vl8
Magnesium binding site 1 out of 1 in the Crystal Structure of Gluconate 5-Dehydrogenase (TM0441) From Thermotoga Maritima at 2.07 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Gluconate 5-Dehydrogenase (TM0441) From Thermotoga Maritima at 2.07 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg256

b:26.9
occ:1.00
 OE1 B:GLU151 2.0 38.6 1.0
O B:HOH277 2.2 21.0 1.0
O B:HOH276 2.3 22.5 1.0
O B:HOH275 2.3 20.6 1.0
CD B:GLU151 3.1 35.0 1.0
OE2 B:GLU151 3.4 30.1 1.0
OE2 B:GLU150 4.1 42.6 1.0
O B:THR253 4.2 26.4 1.0
CG B:GLU151 4.4 27.2 1.0
CG B:GLU150 4.4 34.7 1.0
CB B:GLU151 4.6 30.8 1.0
O B:ASN255 4.7 22.2 1.0
CD B:GLU150 4.7 50.9 1.0
CA B:THR253 4.9 27.1 1.0
C B:THR253 4.9 26.3 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Aug 13 15:05:33 2024

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