Magnesium in PDB 1vlb: Structure Refinement of the Aldehyde Oxidoreductase From Desulfovibrio Gigas at 1.28 A

All present enzymatic activity of Structure Refinement of the Aldehyde Oxidoreductase From Desulfovibrio Gigas at 1.28 A:
1.2.3.1;

The structure of Structure Refinement of the Aldehyde Oxidoreductase From Desulfovibrio Gigas at 1.28 A, PDB code: 1vlb was solved by J.M.Rebelo, J.M.Dias, R.Huber, J.J.G.Moura, M.J.Romao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.40 / 1.28
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	141.780, 141.780, 160.870, 90.00, 90.00, 120.00
R / Rfree (%)	14.8 / 19.3

The structure of Structure Refinement of the Aldehyde Oxidoreductase From Desulfovibrio Gigas at 1.28 A also contains other interesting chemical elements:

Molybdenum	(Mo)	1 atom
Iron	(Fe)	4 atoms
Chlorine	(Cl)	3 atoms

The binding sites of Magnesium atom in the Structure Refinement of the Aldehyde Oxidoreductase From Desulfovibrio Gigas at 1.28 A (pdb code 1vlb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure Refinement of the Aldehyde Oxidoreductase From Desulfovibrio Gigas at 1.28 A, PDB code: 1vlb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure Refinement of the Aldehyde Oxidoreductase From Desulfovibrio Gigas at 1.28 A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure Refinement of the Aldehyde Oxidoreductase From Desulfovibrio Gigas at 1.28 A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg917 b:20.1 occ:1.00 OE2 A:GLU903 2.1 22.2 1.0 OE2 A:GLU899 2.1 19.9 1.0 O A:HOH4272 2.1 23.8 1.0 CD A:GLU903 3.1 25.1 1.0 CD A:GLU899 3.2 19.3 1.0 CG A:GLU903 3.6 19.5 1.0 CG A:GLU899 3.6 19.2 1.0 O A:HOH5097 3.9 46.2 1.0 OE1 A:GLU903 4.2 30.6 1.0 O A:HOH5100 4.3 47.1 1.0 OE1 A:GLU899 4.3 20.5 1.0 O A:HOH4271 4.4 20.2 1.0 O A:HOH5096 4.5 42.0 1.0 O A:HOH5014 4.6 40.3 1.0 O A:HOH4836 4.8 29.2 1.0 O A:HOH4270 5.0 28.4 1.0

Magnesium binding site 2 out of 2 in the Structure Refinement of the Aldehyde Oxidoreductase From Desulfovibrio Gigas at 1.28 A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure Refinement of the Aldehyde Oxidoreductase From Desulfovibrio Gigas at 1.28 A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg919 b:39.2 occ:1.00 O A:HOH4801 2.0 38.8 1.0 O A:HOH4950 2.0 36.1 1.0 O A:HOH4802 2.2 48.5 1.0 O A:HOH5038 2.3 35.1 1.0 O A:HOH4217 2.3 30.4 1.0 O A:HOH4424 2.3 44.9 1.0 O A:HOH4212 4.1 30.7 1.0 O A:HOH4640 4.2 50.1 1.0 O A:HOH4957 4.2 31.0 1.0 O A:HOH4503 4.2 27.7 1.0 O A:HOH4519 4.3 30.8 1.0 O A:HOH4946 4.4 39.3 1.0 O A:HOH4522 4.4 48.2 1.0 OD2 A:ASP572 4.4 24.0 1.0 O A:HOH4945 4.8 48.1 1.0 ND2 A:ASN511 4.9 22.5 1.0

J.M.Rebelo, J.M.Dias, R.Huber, J.J.G.Moura, M.J.Romao. Structure Refinement of the Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop) at 1.28 A J.Biol.Inorg.Chem. V. 6 791 2001.
ISSN: ISSN 0949-8257
PubMed: 11713686
DOI: 10.1007/S007750100255