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Magnesium in PDB 1vom: Complex Between Dictyostelium Myosin and Mgadp and Vanadate at 1.9A Resolution

Protein crystallography data

The structure of Complex Between Dictyostelium Myosin and Mgadp and Vanadate at 1.9A Resolution, PDB code: 1vom was solved by I.Rayment, C.A.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 84.500, 145.400, 153.800, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / n/a

Other elements in 1vom:

The structure of Complex Between Dictyostelium Myosin and Mgadp and Vanadate at 1.9A Resolution also contains other interesting chemical elements:

Vanadium (V) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Complex Between Dictyostelium Myosin and Mgadp and Vanadate at 1.9A Resolution (pdb code 1vom). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Complex Between Dictyostelium Myosin and Mgadp and Vanadate at 1.9A Resolution, PDB code: 1vom:

Magnesium binding site 1 out of 1 in 1vom

Go back to Magnesium Binding Sites List in 1vom
Magnesium binding site 1 out of 1 in the Complex Between Dictyostelium Myosin and Mgadp and Vanadate at 1.9A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Complex Between Dictyostelium Myosin and Mgadp and Vanadate at 1.9A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg997

b:15.0
occ:1.00
O1 A:VO4998 1.9 10.7 1.0
OG1 A:THR186 2.0 17.8 1.0
O A:HOH1694 2.0 11.0 1.0
O A:HOH1695 2.1 11.2 1.0
OG A:SER237 2.1 12.8 1.0
O1B A:ADP999 2.2 10.1 1.0
CB A:THR186 3.0 14.5 1.0
CB A:SER237 3.0 11.5 1.0
PB A:ADP999 3.4 13.8 1.0
V A:VO4998 3.4 9.7 1.0
O3B A:ADP999 3.7 12.7 1.0
N A:SER237 3.7 11.6 1.0
N A:THR186 3.9 12.1 1.0
OD1 A:ASP454 4.0 17.8 1.0
CA A:SER237 4.0 10.5 1.0
CA A:THR186 4.0 10.0 1.0
CG2 A:THR186 4.0 17.9 1.0
O2A A:ADP999 4.1 15.0 1.0
OD2 A:ASP454 4.2 16.9 1.0
O A:HOH1054 4.3 25.0 1.0
O3A A:ADP999 4.3 17.3 1.0
O3 A:VO4998 4.4 11.6 1.0
O2B A:ADP999 4.5 13.2 1.0
CG A:ASP454 4.5 12.3 1.0
PA A:ADP999 4.6 13.0 1.0
O A:ILE455 4.6 15.9 1.0
O A:ASN235 4.6 14.8 1.0
O1A A:ADP999 4.7 8.4 1.0
O4 A:VO4998 4.7 15.3 1.0
O2 A:VO4998 4.7 7.8 1.0
ND2 A:ASN227 4.8 21.9 1.0
C A:SER236 4.8 11.5 1.0
ND2 A:ASN233 4.9 9.9 1.0
CE A:LYS185 4.9 10.8 1.0
O A:HOH1036 5.0 18.0 1.0
CB A:LYS185 5.0 8.3 1.0

Reference:

C.A.Smith, I.Rayment. X-Ray Structure of the Magnesium(II).Adp.Vanadate Complex of the Dictyostelium Discoideum Myosin Motor Domain to 1.9 A Resolution. Biochemistry V. 35 5404 1996.
ISSN: ISSN 0006-2960
PubMed: 8611530
DOI: 10.1021/BI952633+
Page generated: Mon Dec 14 06:54:41 2020

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