Magnesium in PDB 1vro: Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates For Mad Phasing of A Dna Structure

The structure of Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates For Mad Phasing of A Dna Structure, PDB code: 1vro was solved by C.J.Wilds, R.Pattanayek, C.Pan, Z.Wawrzak, M.Egli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	17.778, 31.348, 44.116, 90.00, 90.00, 90.00
R / Rfree (%)	9.7 / 12.9

The binding sites of Magnesium atom in the Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates For Mad Phasing of A Dna Structure (pdb code 1vro). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates For Mad Phasing of A Dna Structure, PDB code: 1vro:

Magnesium binding site 1 out of 1 in the Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates For Mad Phasing of A Dna Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates For Mad Phasing of A Dna Structure within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:11.1 occ:1.00 O B:HOH439 2.0 11.7 1.0 O B:HOH437 2.0 13.1 1.0 O B:HOH420 2.0 16.5 1.0 O B:HOH431 2.0 13.6 1.0 O B:HOH418 2.2 12.2 1.0 N7 B:DG112 2.3 7.1 1.0 C8 B:DG112 3.2 6.6 1.0 C5 B:DG112 3.4 5.8 1.0 O6 B:DG112 3.5 8.0 1.0 C6 B:DG112 3.8 5.6 1.0 OP1 B:DC111 4.3 8.1 1.0 O A:HOH441 4.3 13.7 1.0 N9 B:DG112 4.5 5.5 1.0 C4 B:DG112 4.5 5.2 1.0

C.J.Wilds, R.Pattanayek, C.Pan, Z.Wawrzak, M.Egli. Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates For Mad Phasing of A Dna Structure J.Am.Chem.Soc. V. 124 14910 2002.
ISSN: ISSN 0002-7863
PubMed: 12475332
DOI: 10.1021/JA021058B