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Magnesium in PDB 1vs0: Crystal Structure of the Ligase Domain From M. Tuberculosis Ligd at 2.4A

Protein crystallography data

The structure of Crystal Structure of the Ligase Domain From M. Tuberculosis Ligd at 2.4A, PDB code: 1vs0 was solved by D.Akey, A.Martins, J.Aniukwu, M.S.Glickman, S.Shuman, J.M.Berger, Tbstructural Genomics Consortium (Tbsgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.40
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 57.102, 57.102, 368.957, 90.00, 90.00, 120.00
R / Rfree (%) 19.2 / 24.8

Other elements in 1vs0:

The structure of Crystal Structure of the Ligase Domain From M. Tuberculosis Ligd at 2.4A also contains other interesting chemical elements:

Zinc (Zn) 4 atoms
Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Ligase Domain From M. Tuberculosis Ligd at 2.4A (pdb code 1vs0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Ligase Domain From M. Tuberculosis Ligd at 2.4A, PDB code: 1vs0:

Magnesium binding site 1 out of 1 in 1vs0

Go back to Magnesium Binding Sites List in 1vs0
Magnesium binding site 1 out of 1 in the Crystal Structure of the Ligase Domain From M. Tuberculosis Ligd at 2.4A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Ligase Domain From M. Tuberculosis Ligd at 2.4A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg9009

b:23.4
occ:1.00
OE1 A:GLU454 2.2 48.4 1.0
OE2 A:GLU454 2.3 47.5 1.0
CD A:GLU454 2.5 45.8 1.0
OD2 A:ASP456 3.4 43.2 1.0
CG A:GLU454 3.9 45.1 1.0
CG A:ASP456 4.7 41.3 1.0
O A:HOH9080 4.9 31.5 1.0
CB A:GLU454 4.9 39.0 1.0

Reference:

D.Akey, A.Martins, J.Aniukwu, M.S.Glickman, S.Shuman, J.M.Berger. Crystal Structure and Nonhomologous End-Joining Function of the Ligase Component of Mycobacterium Dna Ligase D. J.Biol.Chem. V. 281 13412 2006.
ISSN: ISSN 0021-9258
PubMed: 16476729
DOI: 10.1074/JBC.M513550200
Page generated: Mon Dec 14 07:00:25 2020

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