Magnesium in PDB 1w5c: Photosystem II From Thermosynechococcus Elongatus

The structure of Photosystem II From Thermosynechococcus Elongatus, PDB code: 1w5c was solved by J.Biesiadka, B.Loll, J.Kern, K.-D.Irrgang, A.Zouni, W.Saenger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.0 / 3.2
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	127.517, 224.612, 305.632, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The structure of Photosystem II From Thermosynechococcus Elongatus also contains other interesting chemical elements:

Manganese	(Mn)	8 atoms
Iron	(Fe)	6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70;

Binding sites:

The binding sites of Magnesium atom in the Photosystem II From Thermosynechococcus Elongatus (pdb code 1w5c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 70 binding sites of Magnesium where determined in the Photosystem II From Thermosynechococcus Elongatus, PDB code: 1w5c:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 70 in the Photosystem II From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Photosystem II From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1342 b:45.2 occ:1.00 MG A:CLA1342 0.0 45.2 1.0 ND A:CLA1342 2.0 45.2 1.0 NB A:CLA1342 2.1 45.2 1.0 NC A:CLA1342 2.1 45.2 1.0 NA A:CLA1342 2.2 45.2 1.0 NE2 A:HIS198 2.2 45.2 1.0 C4D A:CLA1342 3.0 45.2 1.0 CE1 A:HIS198 3.0 45.2 1.0 C1B A:CLA1342 3.0 45.2 1.0 C1D A:CLA1342 3.1 45.2 1.0 C4B A:CLA1342 3.1 45.2 1.0 C1C A:CLA1342 3.1 45.2 1.0 C4A A:CLA1342 3.1 45.2 1.0 C4C A:CLA1342 3.1 45.2 1.0 C1A A:CLA1342 3.2 45.2 1.0 CD2 A:HIS198 3.4 45.2 1.0 CHB A:CLA1342 3.4 45.2 1.0 CHD A:CLA1342 3.4 45.2 1.0 CHC A:CLA1342 3.4 45.2 1.0 CHA A:CLA1342 3.5 45.2 1.0 CBB D:CLA1351 4.2 45.2 1.0 C3D A:CLA1342 4.2 45.2 1.0 ND1 A:HIS198 4.2 45.2 1.0 C2D A:CLA1342 4.2 45.2 1.0 C2B A:CLA1342 4.3 45.2 1.0 C3B A:CLA1342 4.3 45.2 1.0 C3C A:CLA1342 4.3 45.2 1.0 C2C A:CLA1342 4.3 45.2 1.0 C3A A:CLA1342 4.4 45.2 1.0 CG A:HIS198 4.4 45.2 1.0 C2A A:CLA1342 4.5 45.2 1.0 CBD A:CLA1342 5.0 45.2 1.0

Magnesium binding site 2 out of 70 in the Photosystem II From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Photosystem II From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1343 b:45.2 occ:1.00 MG A:CLA1343 0.0 45.2 1.0 ND A:CLA1343 2.0 45.2 1.0 NA A:CLA1343 2.1 45.2 1.0 NB A:CLA1343 2.1 45.2 1.0 NC A:CLA1343 2.1 45.2 1.0 C4D A:CLA1343 3.0 45.2 1.0 C4A A:CLA1343 3.0 45.2 1.0 C1B A:CLA1343 3.0 45.2 1.0 C1D A:CLA1343 3.1 45.2 1.0 C1C A:CLA1343 3.1 45.2 1.0 C1A A:CLA1343 3.1 45.2 1.0 C4C A:CLA1343 3.1 45.2 1.0 C4B A:CLA1343 3.1 45.2 1.0 CHB A:CLA1343 3.3 45.2 1.0 CHA A:CLA1343 3.5 45.2 1.0 CHC A:CLA1343 3.5 45.2 1.0 CHD A:CLA1343 3.5 45.2 1.0 C3D A:CLA1343 4.2 45.2 1.0 C2D A:CLA1343 4.3 45.2 1.0 C3A A:CLA1343 4.3 45.2 1.0 C2B A:CLA1343 4.3 45.2 1.0 C2C A:CLA1343 4.3 45.2 1.0 C3C A:CLA1343 4.3 45.2 1.0 C3B A:CLA1343 4.4 45.2 1.0 C2A A:CLA1343 4.4 45.2 1.0 CBB A:PHO1345 4.8 45.2 1.0 OG1 A:THR179 4.8 45.2 1.0 CG2 A:THR179 4.9 45.2 1.0 C20 A:PHO1345 4.9 45.2 1.0 CBD A:CLA1343 4.9 45.2 1.0

Magnesium binding site 3 out of 70 in the Photosystem II From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Photosystem II From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1344 b:45.2 occ:1.00 MG A:CLA1344 0.0 45.2 1.0 ND A:CLA1344 2.0 45.2 1.0 NB A:CLA1344 2.1 45.2 1.0 NC A:CLA1344 2.1 45.2 1.0 NA A:CLA1344 2.2 45.2 1.0 C4D A:CLA1344 3.0 45.2 1.0 C1B A:CLA1344 3.1 45.2 1.0 C4B A:CLA1344 3.1 45.2 1.0 C1D A:CLA1344 3.1 45.2 1.0 C1C A:CLA1344 3.1 45.2 1.0 C4A A:CLA1344 3.1 45.2 1.0 C4C A:CLA1344 3.1 45.2 1.0 C1A A:CLA1344 3.2 45.2 1.0 CHB A:CLA1344 3.4 45.2 1.0 CHC A:CLA1344 3.4 45.2 1.0 CHD A:CLA1344 3.5 45.2 1.0 CHA A:CLA1344 3.5 45.2 1.0 CD1 D:ILE178 3.5 45.2 1.0 C3D A:CLA1344 4.2 45.2 1.0 C2D A:CLA1344 4.3 45.2 1.0 C2B A:CLA1344 4.3 45.2 1.0 C3B A:CLA1344 4.3 45.2 1.0 C2C A:CLA1344 4.3 45.2 1.0 C3C A:CLA1344 4.4 45.2 1.0 C3A A:CLA1344 4.4 45.2 1.0 C2A A:CLA1344 4.5 45.2 1.0 CG1 D:ILE178 4.9 45.2 1.0 CG2 D:ILE178 4.9 45.2 1.0 CBD A:CLA1344 4.9 45.2 1.0

Magnesium binding site 4 out of 70 in the Photosystem II From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Photosystem II From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1346 b:45.2 occ:1.00 MG A:CLA1346 0.0 45.2 1.0 ND A:CLA1346 2.0 45.2 1.0 NB A:CLA1346 2.1 45.2 1.0 NC A:CLA1346 2.1 45.2 1.0 NA A:CLA1346 2.2 45.2 1.0 NE2 A:HIS118 2.8 45.2 1.0 C4D A:CLA1346 3.0 45.2 1.0 C1B A:CLA1346 3.1 45.2 1.0 C1D A:CLA1346 3.1 45.2 1.0 C4B A:CLA1346 3.1 45.2 1.0 C1C A:CLA1346 3.1 45.2 1.0 C4A A:CLA1346 3.1 45.2 1.0 C4C A:CLA1346 3.1 45.2 1.0 C1A A:CLA1346 3.2 45.2 1.0 CE1 A:HIS118 3.3 45.2 1.0 CHB A:CLA1346 3.4 45.2 1.0 CHC A:CLA1346 3.5 45.2 1.0 CHD A:CLA1346 3.5 45.2 1.0 CHA A:CLA1346 3.5 45.2 1.0 CD2 A:HIS118 4.0 45.2 1.0 C3D A:CLA1346 4.2 45.2 1.0 C2D A:CLA1346 4.3 45.2 1.0 C2B A:CLA1346 4.3 45.2 1.0 C3B A:CLA1346 4.4 45.2 1.0 C2C A:CLA1346 4.4 45.2 1.0 C3C A:CLA1346 4.4 45.2 1.0 C3A A:CLA1346 4.4 45.2 1.0 C2A A:CLA1346 4.5 45.2 1.0 ND1 A:HIS118 4.6 45.2 1.0 CG A:HIS118 5.0 45.2 1.0 CBD A:CLA1346 5.0 45.2 1.0

Magnesium binding site 5 out of 70 in the Photosystem II From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Photosystem II From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1482 b:45.2 occ:1.00 MG B:CLA1482 0.0 45.2 1.0 ND B:CLA1482 2.0 45.2 1.0 NB B:CLA1482 2.1 45.2 1.0 NC B:CLA1482 2.1 45.2 1.0 NA B:CLA1482 2.1 45.2 1.0 C4D B:CLA1482 3.0 45.2 1.0 C1B B:CLA1482 3.1 45.2 1.0 C4A B:CLA1482 3.1 45.2 1.0 C1D B:CLA1482 3.1 45.2 1.0 C4B B:CLA1482 3.1 45.2 1.0 C1C B:CLA1482 3.1 45.2 1.0 C4C B:CLA1482 3.1 45.2 1.0 C1A B:CLA1482 3.2 45.2 1.0 CHB B:CLA1482 3.4 45.2 1.0 CHD B:CLA1482 3.5 45.2 1.0 CHC B:CLA1482 3.5 45.2 1.0 CHA B:CLA1482 3.5 45.2 1.0 C3D B:CLA1482 4.2 45.2 1.0 C2D B:CLA1482 4.3 45.2 1.0 C2B B:CLA1482 4.3 45.2 1.0 C3B B:CLA1482 4.3 45.2 1.0 C3A B:CLA1482 4.4 45.2 1.0 C2C B:CLA1482 4.4 45.2 1.0 C3C B:CLA1482 4.4 45.2 1.0 C2A B:CLA1482 4.5 45.2 1.0 C5 B:CLA1482 4.6 45.2 1.0 C2 B:CLA1482 4.6 45.2 1.0 C3 B:CLA1482 4.9 45.2 1.0 CBD B:CLA1482 4.9 45.2 1.0

Magnesium binding site 6 out of 70 in the Photosystem II From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Photosystem II From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1483 b:45.2 occ:1.00 MG B:CLA1483 0.0 45.2 1.0 ND B:CLA1483 2.0 45.2 1.0 ND1 B:HIS201 2.1 45.2 1.0 NB B:CLA1483 2.1 45.2 1.0 NC B:CLA1483 2.1 45.2 1.0 NA B:CLA1483 2.2 45.2 1.0 CE1 B:HIS201 2.8 45.2 1.0 C4D B:CLA1483 3.0 45.2 1.0 C1B B:CLA1483 3.1 45.2 1.0 C4A B:CLA1483 3.1 45.2 1.0 C1D B:CLA1483 3.1 45.2 1.0 C4B B:CLA1483 3.1 45.2 1.0 C1C B:CLA1483 3.1 45.2 1.0 C4C B:CLA1483 3.1 45.2 1.0 CG B:HIS201 3.2 45.2 1.0 C1A B:CLA1483 3.2 45.2 1.0 CHB B:CLA1483 3.4 45.2 1.0 CHC B:CLA1483 3.4 45.2 1.0 CHD B:CLA1483 3.5 45.2 1.0 CHA B:CLA1483 3.5 45.2 1.0 CB B:HIS201 3.7 45.2 1.0 NE2 B:HIS201 4.0 45.2 1.0 CD2 B:HIS201 4.2 45.2 1.0 C3D B:CLA1483 4.2 45.2 1.0 C2D B:CLA1483 4.3 45.2 1.0 C2B B:CLA1483 4.3 45.2 1.0 C3B B:CLA1483 4.3 45.2 1.0 C2C B:CLA1483 4.4 45.2 1.0 CA B:HIS201 4.4 45.2 1.0 C3A B:CLA1483 4.4 45.2 1.0 C3C B:CLA1483 4.4 45.2 1.0 C2A B:CLA1483 4.5 45.2 1.0

Magnesium binding site 7 out of 70 in the Photosystem II From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Photosystem II From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1484 b:45.2 occ:1.00 MG B:CLA1484 0.0 45.2 1.0 ND B:CLA1484 2.0 45.2 1.0 NB B:CLA1484 2.1 45.2 1.0 NC B:CLA1484 2.1 45.2 1.0 NA B:CLA1484 2.1 45.2 1.0 CE1 B:HIS202 2.4 45.2 1.0 NE2 B:HIS202 2.8 45.2 1.0 C4D B:CLA1484 3.0 45.2 1.0 C4A B:CLA1484 3.0 45.2 1.0 C1B B:CLA1484 3.1 45.2 1.0 C1D B:CLA1484 3.1 45.2 1.0 C1C B:CLA1484 3.1 45.2 1.0 C4B B:CLA1484 3.1 45.2 1.0 C4C B:CLA1484 3.1 45.2 1.0 C1A B:CLA1484 3.2 45.2 1.0 CHB B:CLA1484 3.3 45.2 1.0 CHD B:CLA1484 3.5 45.2 1.0 CHC B:CLA1484 3.5 45.2 1.0 CHA B:CLA1484 3.5 45.2 1.0 ND1 B:HIS202 3.5 45.2 1.0 CD2 B:HIS202 4.0 45.2 1.0 C3D B:CLA1484 4.2 45.2 1.0 C2D B:CLA1484 4.3 45.2 1.0 C2B B:CLA1484 4.3 45.2 1.0 C3A B:CLA1484 4.3 45.2 1.0 C2C B:CLA1484 4.4 45.2 1.0 C3C B:CLA1484 4.4 45.2 1.0 C3B B:CLA1484 4.4 45.2 1.0 CG B:HIS202 4.4 45.2 1.0 C2A B:CLA1484 4.4 45.2 1.0 CBD B:CLA1484 5.0 45.2 1.0

Magnesium binding site 8 out of 70 in the Photosystem II From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Photosystem II From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1485 b:45.2 occ:1.00 MG B:CLA1485 0.0 45.2 1.0 ND B:CLA1485 2.0 45.2 1.0 NA B:CLA1485 2.1 45.2 1.0 NB B:CLA1485 2.1 45.2 1.0 NC B:CLA1485 2.1 45.2 1.0 NE2 B:HIS455 2.1 45.2 1.0 C4D B:CLA1485 3.0 45.2 1.0 C4A B:CLA1485 3.0 45.2 1.0 CD2 B:HIS455 3.0 45.2 1.0 C1B B:CLA1485 3.1 45.2 1.0 C1D B:CLA1485 3.1 45.2 1.0 C4B B:CLA1485 3.1 45.2 1.0 C1C B:CLA1485 3.1 45.2 1.0 CE1 B:HIS455 3.1 45.2 1.0 C1A B:CLA1485 3.1 45.2 1.0 C4C B:CLA1485 3.2 45.2 1.0 CHB B:CLA1485 3.3 45.2 1.0 CHA B:CLA1485 3.5 45.2 1.0 CHC B:CLA1485 3.5 45.2 1.0 CHD B:CLA1485 3.5 45.2 1.0 CG B:HIS455 4.2 45.2 1.0 ND1 B:HIS455 4.2 45.2 1.0 C3D B:CLA1485 4.2 45.2 1.0 C2D B:CLA1485 4.3 45.2 1.0 C3A B:CLA1485 4.3 45.2 1.0 C2B B:CLA1485 4.3 45.2 1.0 C3B B:CLA1485 4.3 45.2 1.0 C2C B:CLA1485 4.4 45.2 1.0 C3C B:CLA1485 4.4 45.2 1.0 C2A B:CLA1485 4.4 45.2 1.0 CBD B:CLA1485 4.9 45.2 1.0

Magnesium binding site 9 out of 70 in the Photosystem II From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Photosystem II From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1486 b:45.2 occ:1.00 MG B:CLA1486 0.0 45.2 1.0 ND B:CLA1486 2.0 45.2 1.0 NB B:CLA1486 2.1 45.2 1.0 NC B:CLA1486 2.1 45.2 1.0 NA B:CLA1486 2.2 45.2 1.0 NE2 B:HIS100 2.6 45.2 1.0 C4D B:CLA1486 3.0 45.2 1.0 C1B B:CLA1486 3.1 45.2 1.0 C4A B:CLA1486 3.1 45.2 1.0 C1D B:CLA1486 3.1 45.2 1.0 C4B B:CLA1486 3.1 45.2 1.0 C1C B:CLA1486 3.1 45.2 1.0 C4C B:CLA1486 3.1 45.2 1.0 C1A B:CLA1486 3.2 45.2 1.0 CHB B:CLA1486 3.4 45.2 1.0 CHC B:CLA1486 3.4 45.2 1.0 CHD B:CLA1486 3.5 45.2 1.0 CE1 B:HIS100 3.5 45.2 1.0 CHA B:CLA1486 3.5 45.2 1.0 CD2 B:HIS100 3.6 45.2 1.0 C3D B:CLA1486 4.2 45.2 1.0 C2D B:CLA1486 4.3 45.2 1.0 C2B B:CLA1486 4.3 45.2 1.0 C3B B:CLA1486 4.4 45.2 1.0 C2C B:CLA1486 4.4 45.2 1.0 C3A B:CLA1486 4.4 45.2 1.0 C3C B:CLA1486 4.4 45.2 1.0 C2A B:CLA1486 4.5 45.2 1.0 ND1 B:HIS100 4.6 45.2 1.0 CG B:HIS100 4.7 45.2 1.0 O1A B:CLA1485 4.9 45.2 1.0 CBD B:CLA1486 5.0 45.2 1.0

Magnesium binding site 10 out of 70 in the Photosystem II From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Photosystem II From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1487 b:45.2 occ:1.00 MG B:CLA1487 0.0 45.2 1.0 ND B:CLA1487 2.0 45.2 1.0 NB B:CLA1487 2.1 45.2 1.0 NC B:CLA1487 2.1 45.2 1.0 NA B:CLA1487 2.2 45.2 1.0 CD2 B:HIS157 2.4 45.2 1.0 NE2 B:HIS157 2.8 45.2 1.0 C4D B:CLA1487 3.0 45.2 1.0 C1B B:CLA1487 3.1 45.2 1.0 C4B B:CLA1487 3.1 45.2 1.0 C1C B:CLA1487 3.1 45.2 1.0 C1D B:CLA1487 3.1 45.2 1.0 C4A B:CLA1487 3.1 45.2 1.0 C4C B:CLA1487 3.1 45.2 1.0 C1A B:CLA1487 3.2 45.2 1.0 CHB B:CLA1487 3.4 45.2 1.0 CHC B:CLA1487 3.4 45.2 1.0 CHA B:CLA1487 3.5 45.2 1.0 CHD B:CLA1487 3.5 45.2 1.0 CG B:HIS157 3.6 45.2 1.0 CE1 B:HIS157 4.0 45.2 1.0 C3D B:CLA1487 4.2 45.2 1.0 C2D B:CLA1487 4.3 45.2 1.0 C2B B:CLA1487 4.3 45.2 1.0 C3B B:CLA1487 4.3 45.2 1.0 C2C B:CLA1487 4.4 45.2 1.0 C3C B:CLA1487 4.4 45.2 1.0 C3A B:CLA1487 4.4 45.2 1.0 ND1 B:HIS157 4.4 45.2 1.0 C2A B:CLA1487 4.5 45.2 1.0 CB B:HIS157 4.6 45.2 1.0 CBD B:CLA1487 4.9 45.2 1.0

J.Biesiadka, B.Loll, J.Kern, K.-D.Irrgang, A.Zouni. Crystal Structure of Cyanobacterial Photosystem II at 3.2 A Resolution: A Closer Look at the Mn- Cluster Phys.Chem.Chem.Phys. V. 6 4733 2004.
ISSN: ISSN 1463-9076