Magnesium in PDB 1w6t: Crystal Structure of Octameric Enolase From Streptococcus Pneumoniae

All present enzymatic activity of Crystal Structure of Octameric Enolase From Streptococcus Pneumoniae:
4.2.1.11;

The structure of Crystal Structure of Octameric Enolase From Streptococcus Pneumoniae, PDB code: 1w6t was solved by S.Ehinger, W.-D.Schubert, S.Bergmann, S.Hammerschmidt, D.W.Heinz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	100.00 / 2.10
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	143.702, 143.702, 100.579, 90.00, 90.00, 90.00
R / Rfree (%)	14.8 / 18.7

The binding sites of Magnesium atom in the Crystal Structure of Octameric Enolase From Streptococcus Pneumoniae (pdb code 1w6t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Octameric Enolase From Streptococcus Pneumoniae, PDB code: 1w6t:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Octameric Enolase From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Octameric Enolase From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg435 b:32.6 occ:1.00 O A:HOH2204 2.0 33.2 1.0 OD2 A:ASP318 2.1 24.1 1.0 OD2 A:ASP242 2.1 24.3 1.0 O A:HOH2212 2.1 28.8 1.0 O A:HOH2195 2.1 35.5 1.0 OE2 A:GLU291 2.2 24.0 1.0 CG A:ASP242 3.1 26.8 1.0 CG A:ASP318 3.2 26.3 1.0 OD1 A:ASP242 3.3 25.5 1.0 CD A:GLU291 3.4 21.0 1.0 CB A:ASP318 3.7 24.9 1.0 NZ A:LYS394 4.0 24.7 1.0 OE1 A:GLU291 4.2 25.5 1.0 CG A:GLU291 4.2 20.0 1.0 OD2 A:ASP292 4.2 19.8 1.0 OD1 A:ASP318 4.2 27.6 1.0 OE2 A:GLU164 4.4 38.8 1.0 CB A:ASP242 4.4 26.8 1.0 NE2 A:GLN163 4.7 32.3 1.0 CD2 A:LEU341 4.7 24.6 1.0 NZ A:LYS343 4.7 25.1 1.0 CB A:ALA244 4.9 26.0 1.0 CD A:GLU164 4.9 35.3 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Octameric Enolase From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Octameric Enolase From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg435 b:36.4 occ:1.00 O B:HOH2174 2.0 37.8 1.0 OD2 B:ASP318 2.0 23.7 1.0 O B:HOH2172 2.1 34.8 1.0 OD2 B:ASP242 2.1 24.7 1.0 OE2 B:GLU291 2.1 25.3 1.0 O B:HOH2173 2.2 30.2 1.0 CG B:ASP242 3.0 28.3 1.0 CG B:ASP318 3.2 25.9 1.0 CD B:GLU291 3.3 21.6 1.0 OD1 B:ASP242 3.4 25.4 1.0 CB B:ASP318 3.6 25.6 1.0 NZ B:LYS394 3.9 27.8 1.0 OE1 B:GLU291 4.1 24.7 1.0 CG B:GLU291 4.2 21.9 1.0 OE2 B:GLU164 4.2 37.2 1.0 OD1 B:ASP318 4.2 27.8 1.0 CB B:ASP242 4.3 27.1 1.0 OD2 B:ASP292 4.5 20.6 1.0 NE2 B:GLN163 4.5 33.5 1.0 NZ B:LYS343 4.6 24.2 1.0 CD2 B:LEU341 4.6 25.0 1.0 CD B:GLU164 4.9 35.4 1.0 OE1 B:GLU164 4.9 33.4 1.0

S.Ehinger, W.-D.Schubert, S.Bergmann, S.Hammerschmidt, D.W.Heinz. Plasmin(Ogen)-Binding Alpha-Enolase From Streptococcus Pneumoniae: Crystal Structure and Evaluation of Plasmin(Ogen)-Binding Sites J.Mol.Biol. V. 343 997 2004.
ISSN: ISSN 0022-2836
PubMed: 15476816
DOI: 10.1016/J.JMB.2004.08.088