Magnesium in PDB 1wdt: Crystal Structure of TTK003000868 From Thermus Thermophilus HB8

The structure of Crystal Structure of TTK003000868 From Thermus Thermophilus HB8, PDB code: 1wdt was solved by H.Wang, C.Takemoto-Hori, K.Murayama, S.Sekine, T.Terada, M.Shirouzu, S.Kuramitsu, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.24 / 2.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	158.372, 56.293, 91.825, 90.00, 104.33, 90.00
R / Rfree (%)	19.7 / 24.1

The binding sites of Magnesium atom in the Crystal Structure of TTK003000868 From Thermus Thermophilus HB8 (pdb code 1wdt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of TTK003000868 From Thermus Thermophilus HB8, PDB code: 1wdt:

Magnesium binding site 1 out of 1 in the Crystal Structure of TTK003000868 From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of TTK003000868 From Thermus Thermophilus HB8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:35.4 occ:1.00 OG1 A:THR61 2.0 16.8 1.0 O2G A:GTP700 2.0 37.2 1.0 O A:HOH702 2.2 23.6 1.0 O A:HOH703 2.3 19.9 1.0 O2B A:GTP700 2.3 33.2 1.0 OG1 A:THR23 2.3 19.9 1.0 CB A:THR61 3.1 13.8 1.0 PG A:GTP700 3.2 45.4 1.0 PB A:GTP700 3.2 29.3 1.0 O3B A:GTP700 3.3 45.2 1.0 CB A:THR23 3.4 18.5 1.0 N A:THR61 3.8 13.8 1.0 N A:THR23 3.9 17.8 1.0 O3G A:GTP700 4.0 43.6 1.0 CA A:THR61 4.0 19.4 1.0 O2A A:GTP700 4.1 59.5 1.0 O3A A:GTP700 4.1 38.1 1.0 CG2 A:THR61 4.2 16.1 1.0 OD2 A:ASP50 4.2 22.2 1.0 CA A:THR23 4.2 17.2 1.0 OD1 A:ASP80 4.2 21.9 1.0 O1G A:GTP700 4.4 46.2 1.0 PA A:GTP700 4.4 44.9 1.0 OD2 A:ASP80 4.4 20.0 1.0 O1B A:GTP700 4.5 33.8 1.0 CG2 A:THR23 4.5 16.5 1.0 OD1 A:ASP50 4.6 25.6 1.0 CB A:LYS22 4.6 8.7 1.0 O A:ALA81 4.6 9.7 1.0 CG A:ASP80 4.7 28.2 1.0 CE A:LYS22 4.8 19.9 1.0 CG A:ASP50 4.8 26.4 1.0 NZ A:LYS22 4.8 42.2 1.0 C A:THR60 4.9 19.5 1.0 C A:LYS22 4.9 17.2 1.0

H.Wang, C.Takemoto-Hori, K.Murayama, S.Sekine, T.Terada, M.Shirouzu, S.Kuramitsu, S.Yokoyama. Crystal Structure of TTK003000868 From Thermus Thermophilus HB8 To Be Published.