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Magnesium in PDB 1wne: Foot and Mouth Disease Virus Rna-Dependent Rna Polymerase in Complex with A Template-Primer Rna

Enzymatic activity of Foot and Mouth Disease Virus Rna-Dependent Rna Polymerase in Complex with A Template-Primer Rna

All present enzymatic activity of Foot and Mouth Disease Virus Rna-Dependent Rna Polymerase in Complex with A Template-Primer Rna:
2.7.7.48;

Protein crystallography data

The structure of Foot and Mouth Disease Virus Rna-Dependent Rna Polymerase in Complex with A Template-Primer Rna, PDB code: 1wne was solved by C.Ferrer-Orta, A.Arias, R.Perez-Luque, C.Escarmis, E.Domingo, N.Verdaguer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.52 / 3.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 94.627, 94.627, 100.513, 90.00, 90.00, 120.00
R / Rfree (%) 27.3 / 28

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Foot and Mouth Disease Virus Rna-Dependent Rna Polymerase in Complex with A Template-Primer Rna (pdb code 1wne). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Foot and Mouth Disease Virus Rna-Dependent Rna Polymerase in Complex with A Template-Primer Rna, PDB code: 1wne:

Magnesium binding site 1 out of 1 in 1wne

Go back to Magnesium Binding Sites List in 1wne
Magnesium binding site 1 out of 1 in the Foot and Mouth Disease Virus Rna-Dependent Rna Polymerase in Complex with A Template-Primer Rna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Foot and Mouth Disease Virus Rna-Dependent Rna Polymerase in Complex with A Template-Primer Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg665

b:37.2
occ:1.00
 O A:HOH668 2.7 35.4 1.0
OD1 A:ASP238 3.0 53.1 1.0
O A:VAL239 3.1 48.7 1.0
OD1 A:ASP240 3.2 47.5 1.0
OD1 A:ASP339 3.4 47.6 1.0
CG A:ASP238 3.5 52.6 1.0
OD2 A:ASP238 3.5 52.4 1.0
O A:ILE340 3.6 48.9 1.0
O A:THR384 3.8 44.8 1.0
N A:ILE340 4.0 48.3 1.0
CG A:ASP339 4.0 47.3 1.0
C A:VAL239 4.2 48.8 1.0
CG A:ASP240 4.4 47.7 1.0
OD2 A:ASP339 4.4 46.9 1.0
C A:ASP238 4.4 51.0 1.0
CA A:ASP339 4.5 47.5 1.0
O A:ASP238 4.6 50.8 1.0
C A:ILE340 4.6 48.9 1.0
N A:VAL239 4.6 50.0 1.0
CB A:ASP238 4.7 52.0 1.0
CA A:ASP238 4.8 51.8 1.0
C A:ASP339 4.8 47.7 1.0
CA A:ILE340 4.9 48.6 1.0
CB A:ASP339 4.9 47.4 1.0
CA A:ASP240 5.0 47.5 1.0
N A:ASP240 5.0 48.2 1.0

Reference:

C.Ferrer-Orta, A.Arias, R.Perez-Luque, C.Escarmis, E.Domingo, N.Verdaguer. Structure of Foot-and-Mouth Disease Virus Rna-Dependent Rna Polymerase and Its Complex with A Template-Primer Rna J.Biol.Chem. V. 279 47212 2004.
ISSN: ISSN 0021-9258
PubMed: 15294895
DOI: 10.1074/JBC.M405465200
Page generated: Mon Dec 14 07:02:13 2020

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