Atomistry » Magnesium » PDB 1we2-1x1s » 1wqa
Atomistry »
  Magnesium »
    PDB 1we2-1x1s »
      1wqa »

Magnesium in PDB 1wqa: Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+

Enzymatic activity of Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+

All present enzymatic activity of Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+:
5.4.2.8;

Protein crystallography data

The structure of Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+, PDB code: 1wqa was solved by T.Kawamura, M.Tsuge, N.Watanabe, I.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 77.653, 137.916, 98.409, 90.00, 93.27, 90.00
R / Rfree (%) 21.6 / 23.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+ (pdb code 1wqa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+, PDB code: 1wqa:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 1wqa

Go back to Magnesium Binding Sites List in 1wqa
Magnesium binding site 1 out of 4 in the Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg456

b:32.1
occ:1.00
 OD1 A:ASP247 1.9 25.1 1.0
OD1 A:ASP243 2.0 22.9 1.0
OD2 A:ASP245 2.2 20.9 1.0
OG A:SER101 2.3 28.1 1.0
CG A:ASP247 2.9 24.7 1.0
CG A:ASP243 3.1 24.0 1.0
CG A:ASP245 3.1 19.9 1.0
OD2 A:ASP247 3.3 28.1 1.0
CB A:SER101 3.3 26.4 1.0
NH1 A:ARG248 3.4 53.2 1.0
OD1 A:ASP245 3.4 20.0 1.0
OD2 A:ASP243 3.6 20.7 1.0
CA A:SER101 4.1 25.9 1.0
CB A:ASP247 4.2 20.5 1.0
CB A:ASP243 4.3 21.0 1.0
N A:ASP247 4.4 20.3 1.0
C A:SER101 4.5 26.1 1.0
CG A:ARG248 4.5 38.8 1.0
CB A:ASP245 4.5 18.0 1.0
CZ A:ARG248 4.5 52.6 1.0
N A:ASP245 4.6 19.7 1.0
N A:HIS102 4.7 25.0 1.0
O A:HOH625 4.8 39.2 1.0
N A:ARG248 4.8 22.8 1.0
CA A:ASP247 4.9 21.0 1.0
CA A:ASP245 4.9 18.6 1.0

Magnesium binding site 2 out of 4 in 1wqa

Go back to Magnesium Binding Sites List in 1wqa
Magnesium binding site 2 out of 4 in the Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg456

b:28.4
occ:1.00
 OD1 B:ASP247 2.0 25.7 1.0
OD1 B:ASP243 2.0 22.5 1.0
OD2 B:ASP245 2.1 20.6 1.0
OG B:SER101 2.3 28.8 1.0
O B:HOH553 2.3 29.2 1.0
CG B:ASP247 2.9 24.2 1.0
CG B:ASP245 3.1 22.1 1.0
CG B:ASP243 3.1 21.3 1.0
OD2 B:ASP247 3.3 26.8 1.0
CB B:SER101 3.3 26.4 1.0
OD1 B:ASP245 3.4 20.4 1.0
OD2 B:ASP243 3.6 20.9 1.0
CA B:SER101 4.0 25.7 1.0
CB B:ASP247 4.2 20.4 1.0
CB B:ASP243 4.4 20.6 1.0
O B:HOH622 4.4 35.1 1.0
C B:SER101 4.4 25.6 1.0
N B:ASP247 4.5 19.3 1.0
CB B:ASP245 4.5 19.3 1.0
CG B:ARG248 4.5 31.8 1.0
N B:ASP245 4.6 17.8 1.0
N B:HIS102 4.7 25.2 1.0
N B:ARG248 4.8 20.8 1.0
CA B:ASP245 4.9 18.5 1.0
CA B:ASP247 4.9 19.3 1.0
N B:ALA246 4.9 17.2 1.0
C B:ASP245 5.0 17.3 1.0

Magnesium binding site 3 out of 4 in 1wqa

Go back to Magnesium Binding Sites List in 1wqa
Magnesium binding site 3 out of 4 in the Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg456

b:29.2
occ:1.00
 OD1 C:ASP247 2.0 22.8 1.0
OD2 C:ASP245 2.0 18.7 1.0
OD1 C:ASP243 2.0 20.8 1.0
OG C:SER101 2.2 23.7 1.0
O C:HOH580 2.4 25.1 1.0
CG C:ASP247 3.0 21.6 1.0
CG C:ASP245 3.0 20.7 1.0
CG C:ASP243 3.2 21.9 1.0
OD1 C:ASP245 3.3 19.6 1.0
CB C:SER101 3.4 23.8 1.0
OD2 C:ASP247 3.4 23.6 1.0
OD2 C:ASP243 3.7 19.9 1.0
CA C:SER101 4.0 24.2 1.0
CB C:ASP247 4.2 19.7 1.0
CB C:ASP243 4.4 20.6 1.0
C C:SER101 4.4 24.7 1.0
CB C:ASP245 4.4 18.6 1.0
N C:ASP247 4.4 18.3 1.0
CG C:ARG248 4.5 32.4 1.0
N C:ASP245 4.5 19.0 1.0
N C:HIS102 4.7 24.1 1.0
O C:HOH623 4.7 39.9 1.0
CA C:ASP245 4.8 17.4 1.0
CA C:ASP247 4.9 18.5 1.0
N C:ARG248 4.9 19.7 1.0
N C:ALA246 4.9 16.0 1.0
O C:SER101 4.9 26.0 1.0
C C:ASP245 4.9 17.8 1.0

Magnesium binding site 4 out of 4 in 1wqa

Go back to Magnesium Binding Sites List in 1wqa
Magnesium binding site 4 out of 4 in the Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase Complexed with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg456

b:34.2
occ:1.00
 OD1 D:ASP243 1.9 22.1 1.0
OD1 D:ASP247 1.9 25.0 1.0
OD2 D:ASP245 2.1 20.2 1.0
OG D:SER101 2.3 28.9 1.0
CG D:ASP247 2.9 24.6 1.0
CG D:ASP243 3.0 23.4 1.0
CG D:ASP245 3.1 20.9 1.0
OD2 D:ASP247 3.3 29.0 1.0
OD1 D:ASP245 3.4 19.6 1.0
CB D:SER101 3.4 25.2 1.0
OD2 D:ASP243 3.5 22.9 1.0
NH1 D:ARG248 3.6 47.7 1.0
CA D:SER101 4.1 25.3 1.0
CB D:ASP247 4.2 23.6 1.0
CB D:ASP243 4.2 21.8 1.0
CG D:ARG248 4.3 35.2 1.0
N D:ASP247 4.3 22.1 1.0
C D:SER101 4.4 25.7 1.0
CB D:ASP245 4.5 19.3 1.0
N D:ASP245 4.5 20.4 1.0
CZ D:ARG248 4.7 47.6 1.0
N D:HIS102 4.7 24.9 1.0
N D:ARG248 4.7 25.4 1.0
CA D:ASP247 4.8 23.0 1.0
CA D:ASP245 4.8 20.3 1.0
N D:ALA246 4.9 19.7 1.0
C D:ASP245 4.9 18.1 1.0
O D:SER101 5.0 26.6 1.0

Reference:

T.Kawamura, M.Tsuge, N.Watanabe, I.Tanaka. Crystal Structure of Pyrococcus Horikoshii Phosphomannomutase/Phosphoglucomutase To Be Published.
Page generated: Tue Aug 13 17:23:14 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy