Magnesium in PDB 1wtc: Crystal Structure of S.Pombe Serine Racemase Complex with Amppcp

All present enzymatic activity of Crystal Structure of S.Pombe Serine Racemase Complex with Amppcp:
5.1.1.16;

The structure of Crystal Structure of S.Pombe Serine Racemase Complex with Amppcp, PDB code: 1wtc was solved by M.Goto, I.Miyahara, K.Hirotsu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.90
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	69.426, 148.092, 64.662, 90.00, 90.00, 90.00
R / Rfree (%)	22.8 / 26.6

The binding sites of Magnesium atom in the Crystal Structure of S.Pombe Serine Racemase Complex with Amppcp (pdb code 1wtc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of S.Pombe Serine Racemase Complex with Amppcp, PDB code: 1wtc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of S.Pombe Serine Racemase Complex with Amppcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of S.Pombe Serine Racemase Complex with Amppcp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg360 b:15.8 occ:1.00 OD1 A:ASP214 2.3 25.9 1.0 O A:HOH489 2.4 21.7 1.0 O A:GLY212 2.4 22.3 1.0 OE2 A:GLU208 2.5 24.7 1.0 O A:HOH468 2.5 19.1 1.0 O A:HOH494 2.6 34.3 1.0 CD A:GLU208 3.3 22.9 1.0 CG A:ASP214 3.5 28.9 1.0 C A:GLY212 3.6 24.8 1.0 CG A:GLU208 3.8 21.7 1.0 N A:ASP214 4.0 27.5 1.0 CB A:GLU208 4.1 21.1 1.0 OD2 A:ASP214 4.1 26.5 1.0 O A:ALA237 4.1 21.0 1.0 O A:THR239 4.2 34.7 1.0 N A:GLY215 4.2 29.6 1.0 OE1 A:GLU208 4.3 22.1 1.0 CA A:GLY212 4.4 24.9 1.0 N A:ASN213 4.5 24.5 1.0 O A:GLY183 4.5 24.5 1.0 CA A:ASN213 4.6 26.5 1.0 CB A:ASP214 4.6 28.3 1.0 OG1 A:THR239 4.6 35.8 1.0 O A:LEU182 4.6 25.2 1.0 C A:ASN213 4.7 26.4 1.0 CA A:ASP214 4.7 28.9 1.0 CD A:PRO209 4.8 22.5 1.0 C A:ASP214 5.0 28.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of S.Pombe Serine Racemase Complex with Amppcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of S.Pombe Serine Racemase Complex with Amppcp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg380 b:17.3 occ:1.00 O A:HOH528 2.2 12.5 1.0 O A:HOH547 2.3 21.9 1.0 O A:HOH431 2.4 24.0 1.0 O1G A:ACP370 2.4 26.0 1.0 O2B A:ACP370 2.4 18.2 1.0 O A:HOH454 2.4 17.9 1.0 PB A:ACP370 3.3 20.2 1.0 C3B A:ACP370 3.3 20.8 1.0 PG A:ACP370 3.4 23.5 1.0 O3G A:ACP370 3.9 25.1 1.0 O A:HOH384 4.0 14.7 1.0 O A:HOH581 4.1 21.8 1.0 O3A A:ACP370 4.1 19.7 1.0 O A:HOH588 4.2 21.2 1.0 O A:PHE50 4.2 15.0 1.0 O A:HOH579 4.5 17.0 1.0 O1A A:ACP370 4.5 14.0 1.0 O1B A:ACP370 4.6 18.5 1.0 ND2 A:ASN25 4.6 15.0 1.0 O2G A:ACP370 4.6 26.6 1.0 O5' A:ACP370 4.9 18.4 1.0 PA A:ACP370 4.9 17.7 1.0

M.Goto, T.Yamauchi, N.Kamiya, I.Miyahara, T.Yoshimura, H.Mihara, T.Kurihara, K.Hirotsu, N.Esaki. Crystal Structure of A Homolog of Mammalian Serine Racemase From Schizosaccharomyces Pombe J.Biol.Chem. V. 284 25944 2009.
ISSN: ISSN 0021-9258
PubMed: 19640845
DOI: 10.1074/JBC.M109.010470