Atomistry » Magnesium » PDB 1we2-1x1s » 1wui
Atomistry »
  Magnesium »
    PDB 1we2-1x1s »
      1wui »

Magnesium in PDB 1wui: Ultra-High Resolution Structure of the Ni-A State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F

Enzymatic activity of Ultra-High Resolution Structure of the Ni-A State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F

All present enzymatic activity of Ultra-High Resolution Structure of the Ni-A State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F:
1.12.2.1;

Protein crystallography data

The structure of Ultra-High Resolution Structure of the Ni-A State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F, PDB code: 1wui was solved by H.Ogata, S.Hirota, A.Nakahara, H.Komori, N.Shibata, T.Kato, K.Kano, Y.Higuchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.04
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 98.069, 125.966, 66.380, 90.00, 90.00, 90.00
R / Rfree (%) 9.8 / 13.4

Other elements in 1wui:

The structure of Ultra-High Resolution Structure of the Ni-A State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Iron (Fe) 12 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Ultra-High Resolution Structure of the Ni-A State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F (pdb code 1wui). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Ultra-High Resolution Structure of the Ni-A State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F, PDB code: 1wui:

Magnesium binding site 1 out of 1 in 1wui

Go back to Magnesium Binding Sites List in 1wui
Magnesium binding site 1 out of 1 in the Ultra-High Resolution Structure of the Ni-A State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ultra-High Resolution Structure of the Ni-A State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg1005

b:6.2
occ:1.01
 O L:HOH5001 2.0 7.2 1.0
O L:HOH5002 2.1 7.1 1.0
O L:HOH5003 2.1 7.4 1.0
NE2 L:HIS552 2.1 6.5 1.0
O L:LEU498 2.1 6.5 1.0
OE2 L:GLU62 2.1 6.8 1.0
CE1 L:HIS552 3.1 6.6 1.0
CD L:GLU62 3.1 6.8 1.0
CD2 L:HIS552 3.2 6.3 1.0
C L:LEU498 3.3 6.5 1.0
OE1 L:GLU62 3.4 7.1 1.0
N L:LEU498 3.7 6.6 1.0
CA L:LEU498 3.9 6.9 1.0
OE1 L:GLU337 4.1 8.2 1.0
OE1 L:GLN497 4.1 8.0 1.0
OE2 L:GLU337 4.1 8.1 1.0
NZ L:LYS374 4.2 7.0 1.0
CB L:LEU498 4.2 7.2 1.0
ND1 L:HIS552 4.2 6.6 1.0
O L:HOH5620 4.3 7.1 1.0
O L:HOH5006 4.3 7.2 1.0
CG L:HIS552 4.3 6.5 1.0
N L:VAL499 4.4 6.9 1.0
CG L:GLU62 4.4 6.9 1.0
CD L:GLU337 4.5 7.7 1.0
CD L:LYS374 4.6 7.2 1.0
CE L:LYS374 4.7 7.4 1.0
CA L:VAL499 4.7 6.8 1.0
C L:GLN497 4.8 7.1 1.0

Reference:

H.Ogata, S.Hirota, A.Nakahara, H.Komori, N.Shibata, T.Kato, K.Kano, Y.Higuchi. Activation Process of [Nife] Hydrogenase Elucidated By High-Resolution X-Ray Analyses: Conversion of the Ready to the Unready State Structure V. 13 1635 2005.
ISSN: ISSN 0969-2126
PubMed: 16271886
DOI: 10.1016/J.STR.2005.07.018
Page generated: Tue Aug 13 17:24:12 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy