Magnesium in PDB 1wv5: X-Ray Structure of the A-Decamer Gcgtatacgc with A Single 2'-O-Butyl Thymine in Place of T6, Mg-Form

The structure of X-Ray Structure of the A-Decamer Gcgtatacgc with A Single 2'-O-Butyl Thymine in Place of T6, Mg-Form, PDB code: 1wv5 was solved by M.Egli, G.Minasov, V.Tereshko, P.S.Pallan, M.Teplova, G.B.Inamati, E.A.Lesnik, S.R.Owens, B.S.Ross, T.P.Prakash, M.Manoharam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.30
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	44.435, 44.434, 69.533, 90.00, 90.00, 90.00
R / Rfree (%)	23.7 / 26

The binding sites of Magnesium atom in the X-Ray Structure of the A-Decamer Gcgtatacgc with A Single 2'-O-Butyl Thymine in Place of T6, Mg-Form (pdb code 1wv5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure of the A-Decamer Gcgtatacgc with A Single 2'-O-Butyl Thymine in Place of T6, Mg-Form, PDB code: 1wv5:

Magnesium binding site 1 out of 1 in the X-Ray Structure of the A-Decamer Gcgtatacgc with A Single 2'-O-Butyl Thymine in Place of T6, Mg-Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of the A-Decamer Gcgtatacgc with A Single 2'-O-Butyl Thymine in Place of T6, Mg-Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:0.0 occ:1.00 O A:HOH103 2.0 73.4 1.0 O A:HOH102 2.1 71.8 1.0 O A:HOH105 2.3 57.4 1.0 O B:HOH106 2.7 91.5 1.0 O B:HOH225 3.0 70.9 1.0 O B:HOH104 3.3 85.1 1.0 O4 B:2BT16 4.0 59.5 1.0 O4 A:DT4 4.4 62.5 1.0 O6 A:DG3 4.6 59.2 1.0 N6 B:DA17 4.8 58.9 1.0 C5M B:2BT16 4.8 65.5 1.0 N6 A:DA5 4.8 59.1 1.0 N4 A:DC2 5.0 59.5 1.0

M.Egli, G.Minasov, V.Tereshko, P.S.Pallan, M.Teplova, G.B.Inamati, E.A.Lesnik, S.R.Owens, B.S.Ross, T.P.Prakash, M.Manoharan. Probing the Influence of Stereoelectronic Effects on the Biophysical Properties of Oligonucleotides: Comprehensive Analysis of the Rna Affinity, Nuclease Resistance, and Crystal Structure of Ten 2'-O-Ribonucleic Acid Modifications. Biochemistry V. 44 9045 2005.
ISSN: ISSN 0006-2960
PubMed: 15966728
DOI: 10.1021/BI050574M