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Magnesium in PDB 1x06: Crystal Structure of Undecaprenyl Pyrophosphate Synthase in Complex with Mg, Ipp and Fspp

Enzymatic activity of Crystal Structure of Undecaprenyl Pyrophosphate Synthase in Complex with Mg, Ipp and Fspp

All present enzymatic activity of Crystal Structure of Undecaprenyl Pyrophosphate Synthase in Complex with Mg, Ipp and Fspp:
2.5.1.31;

Protein crystallography data

The structure of Crystal Structure of Undecaprenyl Pyrophosphate Synthase in Complex with Mg, Ipp and Fspp, PDB code: 1x06 was solved by R.-T.Guo, T.-P.Ko, A.P.-C.Chen, C.-J.Kuo, A.H.-J.Wang, P.-H.Liang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.90
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 58.122, 58.122, 118.936, 90.00, 90.00, 120.00
R / Rfree (%) 18.2 / 23.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Undecaprenyl Pyrophosphate Synthase in Complex with Mg, Ipp and Fspp (pdb code 1x06). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Undecaprenyl Pyrophosphate Synthase in Complex with Mg, Ipp and Fspp, PDB code: 1x06:

Magnesium binding site 1 out of 1 in 1x06

Go back to Magnesium Binding Sites List in 1x06
Magnesium binding site 1 out of 1 in the Crystal Structure of Undecaprenyl Pyrophosphate Synthase in Complex with Mg, Ipp and Fspp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Undecaprenyl Pyrophosphate Synthase in Complex with Mg, Ipp and Fspp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg900

b:24.0
occ:1.00
 O2A A:FPS901 1.9 30.8 1.0
O2B A:FPS901 2.0 31.3 1.0
O A:HOH833 2.0 28.9 1.0
O A:HOH831 2.0 30.1 1.0
O A:HOH832 2.0 28.0 1.0
OD1 A:ASP26 2.1 25.3 1.0
CG A:ASP26 3.0 19.6 1.0
PA A:FPS901 3.2 34.0 1.0
PB A:FPS901 3.2 32.7 1.0
OD2 A:ASP26 3.3 20.3 1.0
O3A A:FPS901 3.5 35.5 1.0
C1 A:FPS901 3.8 36.9 1.0
O3B A:FPS901 3.9 33.6 1.0
S1 A:FPS901 4.0 38.0 1.0
NH2 A:ARG77 4.1 28.2 1.0
O1 A:PO4903 4.1 50.2 1.0
NH2 A:ARG30 4.2 29.9 1.0
O1B A:FPS901 4.3 30.0 1.0
O4 A:PO4903 4.4 51.1 1.0
CB A:ASP26 4.4 15.9 1.0
O1A A:FPS901 4.5 34.7 1.0
N A:GLY27 4.6 13.0 1.0
O A:HOH688 4.8 55.1 1.0
NH2 A:ARG39 4.8 48.1 1.0
P A:PO4903 4.9 48.2 1.0
CA A:ASP26 4.9 14.4 1.0

Reference:

R.T.Guo, T.P.Ko, A.P.Chen, C.J.Kuo, A.H.Wang, P.H.Liang. Crystal Structures of Undecaprenyl Pyrophosphate Synthase in Complex with Magnesium, Isopentenyl Pyrophosphate, and Farnesyl Thiopyrophosphate: Roles of the Metal Ion and Conserved Residues in Catalysis. J.Biol.Chem. V. 280 20762 2005.
ISSN: ISSN 0021-9258
PubMed: 15788389
DOI: 10.1074/JBC.M502121200
Page generated: Tue Aug 13 17:26:51 2024

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