Magnesium in PDB 1xjr: The Structure of A Rigorously Conserved Rna Element Within the Sars Virus Genome

The structure of The Structure of A Rigorously Conserved Rna Element Within the Sars Virus Genome, PDB code: 1xjr was solved by M.P.Robertson, H.Igel, R.Baertsch, D.Haussler, M.Ares Jr., W.G.Scott, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	80.85 / 2.70
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	93.218, 93.218, 128.109, 90.00, 90.00, 120.00
R / Rfree (%)	23.1 / 24.3

The binding sites of Magnesium atom in the The Structure of A Rigorously Conserved Rna Element Within the Sars Virus Genome (pdb code 1xjr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Structure of A Rigorously Conserved Rna Element Within the Sars Virus Genome, PDB code: 1xjr:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Structure of A Rigorously Conserved Rna Element Within the Sars Virus Genome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of A Rigorously Conserved Rna Element Within the Sars Virus Genome within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:71.0 occ:1.00 O A:HOH206 2.1 69.8 1.0 O A:HOH207 2.1 71.4 1.0 O A:HOH203 2.1 73.9 1.0 O A:HOH205 2.1 69.6 1.0 O A:HOH204 2.1 72.8 1.0 OP1 A:A12 2.2 73.8 1.0 P A:A12 3.6 74.2 1.0 O A:HOH202 3.8 68.9 1.0 N7 A:G34 4.2 67.6 1.0 OP2 A:G13 4.3 70.0 1.0 OP2 A:A12 4.3 73.8 1.0 O6 A:G36 4.3 76.4 1.0 N7 A:G35 4.4 71.7 1.0 O6 A:G35 4.5 72.0 1.0 C5' A:A12 4.6 71.9 1.0 O5' A:A12 4.6 73.7 1.0 O3' A:G11 4.6 73.3 1.0 C8 A:G34 4.8 68.8 1.0 O A:HOH210 4.8 68.3 1.0

Magnesium binding site 2 out of 2 in the The Structure of A Rigorously Conserved Rna Element Within the Sars Virus Genome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of A Rigorously Conserved Rna Element Within the Sars Virus Genome within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:67.1 occ:1.00 OP2 A:A12 2.0 73.8 1.0 O A:HOH212 2.1 68.2 1.0 O A:HOH210 2.1 68.3 1.0 O A:HOH208 2.1 69.5 1.0 O A:HOH211 2.1 67.9 1.0 O A:HOH209 2.1 69.4 1.0 P A:A12 3.4 74.2 1.0 O4 A:U37 3.9 78.3 1.0 O5' A:A12 3.9 73.7 1.0 N7 A:A12 4.0 72.3 1.0 C8 A:A12 4.2 71.7 1.0 O3' A:G11 4.3 73.3 1.0 OP2 A:G11 4.3 74.7 1.0 O6 A:G13 4.3 76.8 1.0 OP1 A:A12 4.3 73.8 1.0 O A:HOH204 4.4 72.8 1.0 N1 A:A38 4.4 67.5 1.0 N7 A:G13 4.4 75.2 1.0 C3' A:G11 4.4 76.2 1.0 O2' A:C10 4.5 74.2 1.0 OP2 A:G13 4.6 70.0 1.0 C2 A:A38 4.6 66.7 1.0 O5' A:G11 5.0 78.0 1.0

M.P.Robertson, H.Igel, R.Baertsch, D.Haussler, M.Ares Jr., W.G.Scott. The Structure of A Rigorously Conserved Rna Element Within the Sars Virus Genome Plos Biol. V. 3 86 2005.
ISSN: ISSN 1544-9173
PubMed: 15630477
DOI: 10.1371/JOURNAL.PBIO.0030005