Atomistry » Magnesium » PDB 1ye8-1yqw » 1yfz
Atomistry »
  Magnesium »
    PDB 1ye8-1yqw »
      1yfz »

Magnesium in PDB 1yfz: Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis

Enzymatic activity of Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis

All present enzymatic activity of Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis:
2.4.2.8;

Protein crystallography data

The structure of Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis, PDB code: 1yfz was solved by Q.Chen, Y.Liang, X.Su, X.Gu, X.Zheng, M.Luo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.60 / 2.20
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 65.770, 137.730, 95.270, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 24.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis (pdb code 1yfz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis, PDB code: 1yfz:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 1yfz

Go back to Magnesium Binding Sites List in 1yfz
Magnesium binding site 1 out of 4 in the Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1191

b:43.3
occ:1.00
 O A:HOH1269 2.0 42.9 1.0
O A:HOH1270 2.1 45.3 1.0
OE2 A:GLU101 2.1 37.8 1.0
O A:HOH1251 2.2 27.0 1.0
OD1 A:ASP102 2.3 33.8 1.0
CD A:GLU101 3.0 34.9 1.0
OE1 A:GLU101 3.3 35.7 1.0
CG A:ASP102 3.3 31.3 1.0
OD2 A:ASP102 3.7 33.4 1.0
O A:HOH1237 4.0 28.6 1.0
O A:ILE103 4.1 34.7 1.0
N A:ASP102 4.2 29.1 1.0
CG A:GLU101 4.4 33.3 1.0
N A:ILE103 4.5 29.8 1.0
O4' A:IMP1210 4.6 59.8 1.0
CB A:ASP102 4.6 31.3 1.0
C4' A:IMP1210 4.6 60.5 1.0
C5' A:IMP1210 4.6 58.5 1.0
CB A:VAL43 4.7 25.9 1.0
CB A:GLU101 4.8 30.0 1.0
O A:VAL43 4.8 25.4 1.0
CH3 A:ACT1200 4.8 45.3 1.0
CA A:GLU101 4.9 28.3 1.0
CA A:ASP102 4.9 30.1 1.0
CG2 A:ILE103 4.9 30.3 1.0
O A:HOH1284 5.0 51.6 1.0

Magnesium binding site 2 out of 4 in 1yfz

Go back to Magnesium Binding Sites List in 1yfz
Magnesium binding site 2 out of 4 in the Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1192

b:44.9
occ:1.00
 OD1 A:ASP161 1.9 34.4 1.0
O A:HOH1274 2.0 35.0 1.0
O A:HOH1257 2.0 37.0 1.0
O2P A:IMP1210 2.0 48.6 1.0
O A:HOH1260 2.3 48.6 1.0
O A:HOH1236 2.3 33.2 1.0
CG A:ASP161 3.0 32.9 1.0
P A:IMP1210 3.2 48.4 1.0
O5' A:IMP1210 3.3 53.7 1.0
OD2 A:ASP161 3.6 35.1 1.0
C5' A:IMP1210 3.6 58.5 1.0
NH1 A:ARG167 3.9 25.9 1.0
NH2 A:ARG167 4.0 26.1 1.0
N3 A:IMP1210 4.1 55.6 1.0
O A:ASP161 4.1 32.8 1.0
O3P A:IMP1210 4.1 47.8 1.0
N A:ASP161 4.2 33.5 1.0
CB A:ASP161 4.3 33.3 1.0
O1P A:IMP1210 4.3 48.5 1.0
CZ A:ARG167 4.4 26.9 1.0
C2 A:IMP1210 4.4 53.9 1.0
C A:ASP161 4.4 33.2 1.0
C4' A:IMP1210 4.5 60.5 1.0
CA A:ASP161 4.5 33.8 1.0
C3' A:IMP1210 4.6 62.1 1.0
O4' A:IMP1210 4.8 59.8 1.0
C2' A:IMP1210 4.9 60.6 1.0

Magnesium binding site 3 out of 4 in 1yfz

Go back to Magnesium Binding Sites List in 1yfz
Magnesium binding site 3 out of 4 in the Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2191

b:37.0
occ:1.00
 O B:HOH2285 1.8 40.7 1.0
OE2 B:GLU101 1.9 30.3 1.0
OD1 B:ASP102 2.0 33.9 1.0
O B:HOH2273 2.1 30.8 1.0
O B:HOH2279 2.1 42.7 1.0
O B:HOH2288 2.2 39.6 1.0
CD B:GLU101 2.9 28.3 1.0
CG B:ASP102 3.1 30.8 1.0
OE1 B:GLU101 3.2 28.2 1.0
OD2 B:ASP102 3.5 32.7 1.0
N B:ASP102 3.9 22.3 1.0
O B:ILE103 4.0 28.3 1.0
N B:ILE103 4.2 23.9 1.0
CG B:GLU101 4.2 26.9 1.0
CB B:ASP102 4.4 27.4 1.0
CB B:GLU101 4.6 23.6 1.0
CA B:ASP102 4.7 24.5 1.0
O B:VAL43 4.7 23.4 1.0
CA B:GLU101 4.7 21.8 1.0
C5' B:IMP2210 4.7 66.5 1.0
C4' B:IMP2210 4.8 67.8 1.0
CG2 B:ILE103 4.8 26.4 1.0
CH3 B:ACT2200 4.8 34.8 1.0
C B:GLU101 4.9 21.7 1.0
CB B:VAL43 4.9 28.6 1.0
O4' B:IMP2210 4.9 68.2 1.0
C B:ILE103 4.9 26.0 1.0
C B:ASP102 5.0 23.4 1.0

Magnesium binding site 4 out of 4 in 1yfz

Go back to Magnesium Binding Sites List in 1yfz
Magnesium binding site 4 out of 4 in the Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Novel Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2192

b:40.2
occ:1.00
 O B:HOH2278 1.9 40.8 1.0
OD1 B:ASP161 2.0 23.2 1.0
O2P B:IMP2210 2.1 55.0 1.0
O B:HOH2283 2.2 41.2 1.0
O B:HOH2258 2.3 43.8 1.0
O B:HOH2253 2.5 27.3 1.0
CG B:ASP161 3.0 23.4 1.0
OD2 B:ASP161 3.3 24.2 1.0
P B:IMP2210 3.3 56.4 1.0
C5' B:IMP2210 3.3 66.5 1.0
O5' B:IMP2210 3.4 61.6 1.0
NH2 B:ARG167 4.0 18.8 1.0
O B:ASP161 4.1 22.9 1.0
NH1 B:ARG167 4.1 20.5 1.0
O3P B:IMP2210 4.2 58.8 1.0
C4' B:IMP2210 4.3 67.8 1.0
N3 B:IMP2210 4.3 64.6 1.0
O B:HOH2291 4.3 51.0 1.0
CB B:ASP161 4.3 24.3 1.0
O1P B:IMP2210 4.3 56.9 1.0
N B:ASP161 4.4 23.6 1.0
C3' B:IMP2210 4.4 69.5 1.0
CZ B:ARG167 4.4 21.5 1.0
O B:HOH2217 4.4 36.2 1.0
O4' B:IMP2210 4.5 68.2 1.0
C B:ASP161 4.5 24.1 1.0
C2 B:IMP2210 4.6 63.4 1.0
CA B:ASP161 4.7 24.2 1.0

Reference:

Q.Chen, Y.Liang, X.Su, X.Gu, X.Zheng, M.Luo. Alternative Imp Binding in Feedback Inhibition of Hypoxanthine-Guanine Phosphoribosyltransferase From Thermoanaerobacter Tengcongensis. J.Mol.Biol. V. 348 1199 2005.
ISSN: ISSN 0022-2836
PubMed: 15854655
DOI: 10.1016/J.JMB.2005.02.064
Page generated: Tue Aug 13 18:37:17 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy