Magnesium in PDB 1yhn: Structure Basis of Rilp Recruitment By RAB7

The structure of Structure Basis of Rilp Recruitment By RAB7, PDB code: 1yhn was solved by M.Wu, T.Wang, W.Hong, H.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 3.00
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	93.134, 93.134, 132.826, 90.00, 90.00, 120.00
R / Rfree (%)	26.8 / 27.8

The binding sites of Magnesium atom in the Structure Basis of Rilp Recruitment By RAB7 (pdb code 1yhn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure Basis of Rilp Recruitment By RAB7, PDB code: 1yhn:

Magnesium binding site 1 out of 1 in the Structure Basis of Rilp Recruitment By RAB7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure Basis of Rilp Recruitment By RAB7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:46.1 occ:1.00 OG1 A:THR22 2.2 20.9 1.0 OG1 A:THR40 2.5 23.7 1.0 O1G A:GTP301 2.8 48.1 1.0 OD1 A:ASP63 2.8 19.1 1.0 O A:THR64 3.1 21.4 1.0 CB A:THR40 3.1 22.8 1.0 O3B A:GTP301 3.1 48.1 1.0 OD2 A:ASP63 3.1 20.6 1.0 CG A:ASP63 3.3 21.2 1.0 PG A:GTP301 3.3 46.9 1.0 CB A:THR22 3.5 21.7 1.0 N A:THR22 3.5 21.8 1.0 O2G A:GTP301 3.6 47.1 1.0 CG2 A:THR40 3.6 23.1 1.0 CE A:LYS21 3.9 23.0 1.0 CA A:THR22 3.9 21.9 1.0 NZ A:LYS21 4.1 21.7 1.0 CB A:LYS21 4.1 22.7 1.0 PB A:GTP301 4.1 46.8 1.0 O3A A:GTP301 4.2 47.7 1.0 C A:THR64 4.3 21.4 1.0 CA A:THR40 4.5 22.8 1.0 C A:LYS21 4.5 22.0 1.0 CG2 A:THR22 4.5 21.5 1.0 N A:THR64 4.6 21.8 1.0 N A:THR40 4.7 22.6 1.0 O1B A:GTP301 4.7 47.4 1.0 CB A:ASP63 4.7 21.7 1.0 O3G A:GTP301 4.8 44.3 1.0 CA A:LYS21 4.9 22.4 1.0 O2A A:GTP301 4.9 48.5 1.0 CG A:LYS21 4.9 23.5 1.0 CD A:LYS21 4.9 23.2 1.0 PA A:GTP301 5.0 48.6 1.0

M.Wu, T.Wang, E.Loh, W.Hong, H.Song. Structural Basis For Recruitment of Rilp By Small Gtpase RAB7. Embo J. V. 24 1491 2005.
ISSN: ISSN 0261-4189
PubMed: 15933719
DOI: 10.1038/SJ.EMBOJ.7600643