Magnesium »
PDB 1ye8-1yqw »
1ykv »
Magnesium in PDB 1ykv: Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene
Protein crystallography data
The structure of Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene, PDB code: 1ykv
was solved by
A.Serganov,
S.Keiper,
L.Malinina,
V.Tereshko,
E.Skripkin,
C.Hobartner,
A.Polonskaia,
A.T.Phan,
R.Wombacher,
R.Micura,
Z.Dauter,
A.Jaschke,
D.J.Patel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 20.00 / 3.30 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 78.288, 44.039, 79.998, 90.00, 106.87, 90.00 |
| R / Rfree (%) | 22.8 / 26.2 |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene
(pdb code 1ykv). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene, PDB code: 1ykv:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;
In total 7 binding sites of Magnesium where determined in the Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene, PDB code: 1ykv:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;
Magnesium binding site 1 out of 7 in 1ykv
Go back to
Magnesium Binding Sites List in 1ykv
Magnesium binding site 1 out
of 7 in the Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene within 5.0Å range:
|
Magnesium binding site 2 out of 7 in 1ykv
Go back to
Magnesium Binding Sites List in 1ykv
Magnesium binding site 2 out
of 7 in the Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene within 5.0Å range:
|
Magnesium binding site 3 out of 7 in 1ykv
Go back to
Magnesium Binding Sites List in 1ykv
Magnesium binding site 3 out
of 7 in the Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene within 5.0Å range:
|
Magnesium binding site 4 out of 7 in 1ykv
Go back to
Magnesium Binding Sites List in 1ykv
Magnesium binding site 4 out
of 7 in the Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene within 5.0Å range:
|
Magnesium binding site 5 out of 7 in 1ykv
Go back to
Magnesium Binding Sites List in 1ykv
Magnesium binding site 5 out
of 7 in the Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene within 5.0Å range:
|
Magnesium binding site 6 out of 7 in 1ykv
Go back to
Magnesium Binding Sites List in 1ykv
Magnesium binding site 6 out
of 7 in the Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene within 5.0Å range:
|
Magnesium binding site 7 out of 7 in 1ykv
Go back to
Magnesium Binding Sites List in 1ykv
Magnesium binding site 7 out
of 7 in the Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of the Diels-Alder Ribozyme Complexed with the Product of the Reaction Between N-Pentylmaleimide and Covalently Attached 9-Hydroxymethylanthracene within 5.0Å range:
|
Reference:
A.Serganov,
S.Keiper,
L.Malinina,
V.Tereshko,
E.Skripkin,
C.Hobartner,
A.Polonskaia,
A.T.Phan,
R.Wombacher,
R.Micura,
Z.Dauter,
A.Jaschke,
D.J.Patel.
Structural Basis For Diels-Alder Ribozyme-Catalyzed Carbon-Carbon Bond Formation. Nat.Struct.Mol.Biol. V. 12 218 2005.
ISSN: ISSN 1545-9993
PubMed: 15723077
DOI: 10.1038/NSMB906
Page generated: Tue Aug 13 19:36:00 2024
ISSN: ISSN 1545-9993
PubMed: 15723077
DOI: 10.1038/NSMB906
Last articles
Zn in 9JPJZn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
