Magnesium in PDB 1yno: High Resolution Structure of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate

Enzymatic activity of High Resolution Structure of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate

All present enzymatic activity of High Resolution Structure of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate:
4.1.1.7;

Protein crystallography data

The structure of High Resolution Structure of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate, PDB code: 1yno was solved by A.K.Bera, M.S.Hasson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	30.00 / 1.22
*Space group*	I 2 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	80.951, 95.460, 136.701, 90.00, 90.00, 90.00
*R / R_free (%)*	12.4 / 15.5

Other elements in 1yno:

The structure of High Resolution Structure of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate also contains other interesting chemical elements:

Calcium

(Ca)

3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the High Resolution Structure of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate (pdb code 1yno). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the High Resolution Structure of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate, PDB code: 1yno:

Magnesium binding site 1 out of 1 in 1yno

Go back to

Magnesium Binding Sites List in 1yno

Magnesium binding site 1 out of 1 in the High Resolution Structure of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of High Resolution Structure of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg531 b:10.9 occ:0.60	O	A:ARG120	2.4	8.5	1.0
	O	A:LEU118	2.5	8.2	1.0
	O	A:ASN117	2.7	8.4	1.0
	O	A:HOH943	3.2	10.5	0.5
	C	A:LEU118	3.3	7.9	1.0
	C	A:ARG120	3.6	8.7	1.0
	CA	A:LEU118	3.7	7.3	1.0
	C	A:ASN117	3.8	7.6	1.0
	N	A:ARG120	3.8	7.7	1.0
	CA	A:ARG120	4.2	7.7	1.0
	N	A:PRO119	4.2	7.5	1.0
	N	A:LEU118	4.2	7.2	1.0
	C	A:PRO119	4.3	7.9	1.0
	CE	A:MET79	4.4	18.9	0.5
	CB	A:ARG120	4.5	8.5	1.0
	CA	A:PRO119	4.6	8.2	1.0
	N	A:PRO121	4.7	8.2	1.0
	CD	A:PRO121	4.9	9.1	1.0
	O	A:PRO119	5.0	9.3	1.0

Reference:

A.K.Bera, N.L.Anderson, M.S.Hasson. High Resolution Structure of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate; To Be Published.

Page generated: Tue Aug 13 19:40:27 2024

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