Atomistry » Magnesium » PDB 1yqz-1yzt » 1ys7
Atomistry »
  Magnesium »
    PDB 1yqz-1yzt »
      1ys7 »

Magnesium in PDB 1ys7: Crystal Structure of the Response Regulator Protein Prra Complexed with MG2+

Protein crystallography data

The structure of Crystal Structure of the Response Regulator Protein Prra Complexed with MG2+, PDB code: 1ys7 was solved by E.Nowak, S.Panjikar, P.Tucker, Mycobacterium Tuberculosis Structuralproteomics Project (Xmtb), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.48 / 1.58
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 37.350, 46.486, 65.554, 100.33, 102.01, 92.90
R / Rfree (%) 18.7 / 23

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Response Regulator Protein Prra Complexed with MG2+ (pdb code 1ys7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Response Regulator Protein Prra Complexed with MG2+, PDB code: 1ys7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1ys7

Go back to Magnesium Binding Sites List in 1ys7
Magnesium binding site 1 out of 2 in the Crystal Structure of the Response Regulator Protein Prra Complexed with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Response Regulator Protein Prra Complexed with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:19.2
occ:1.00
OD1 A:ASP15 2.0 18.9 1.0
O A:HOH4037 2.0 20.7 1.0
OD2 A:ASP58 2.0 21.5 1.0
O A:HOH4021 2.1 25.9 1.0
O A:HOH4014 2.1 22.7 1.0
O A:ASN60 2.1 20.6 1.0
CG A:ASP15 3.0 18.8 1.0
CG A:ASP58 3.1 21.1 1.0
C A:ASN60 3.3 18.2 1.0
OD2 A:ASP15 3.4 25.4 1.0
OD1 A:ASP58 3.6 22.6 1.0
OD1 A:ASP14 4.0 25.8 1.0
CA A:ASN60 4.1 19.5 1.0
CB A:ASN60 4.2 21.2 1.0
CG A:MET61 4.2 16.4 1.0
N A:MET61 4.3 19.7 1.0
N A:ASP15 4.3 19.1 1.0
N A:ASN60 4.3 19.7 1.0
CB A:ASP15 4.4 19.3 1.0
CB A:ASP58 4.4 17.4 1.0
CA A:MET61 4.5 18.5 1.0
O A:HOH4062 4.5 32.5 1.0
NZ A:LYS108 4.6 23.7 1.0
CG A:ASP14 4.7 20.8 1.0
CA A:ASP15 4.8 19.8 1.0
N A:ASP16 4.8 19.8 1.0
OD2 A:ASP14 5.0 24.1 1.0
CB A:MET61 5.0 17.7 1.0

Magnesium binding site 2 out of 2 in 1ys7

Go back to Magnesium Binding Sites List in 1ys7
Magnesium binding site 2 out of 2 in the Crystal Structure of the Response Regulator Protein Prra Complexed with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Response Regulator Protein Prra Complexed with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1001

b:15.9
occ:1.00
OD2 B:ASP58 2.0 15.1 1.0
O B:ASN60 2.0 16.5 1.0
OD1 B:ASP15 2.0 18.6 1.0
O B:HOH3006 2.0 18.0 1.0
O B:HOH3028 2.1 26.0 1.0
O B:HOH3013 2.1 19.4 1.0
CG B:ASP58 3.0 19.9 1.0
CG B:ASP15 3.1 21.0 1.0
C B:ASN60 3.2 14.4 1.0
OD2 B:ASP15 3.4 16.4 1.0
OD1 B:ASP58 3.5 23.9 1.0
OD1 B:ASP14 4.0 19.9 1.0
CA B:ASN60 4.1 16.3 1.0
CB B:ASN60 4.2 16.9 1.0
CG B:MET61 4.2 16.0 1.0
N B:MET61 4.2 14.6 1.0
O B:HOH3074 4.3 36.1 1.0
N B:ASN60 4.4 17.8 1.0
O B:HOH3053 4.4 31.8 1.0
CB B:ASP58 4.4 15.3 1.0
N B:ASP15 4.4 16.3 1.0
CB B:ASP15 4.4 14.7 1.0
O A:HOH4016 4.4 26.0 1.0
CA B:MET61 4.5 14.6 1.0
NZ B:LYS108 4.5 22.9 1.0
CG B:ASP14 4.7 20.3 1.0
CA B:ASP15 4.8 16.3 1.0
N B:ASP16 4.9 17.9 1.0
CB B:MET61 4.9 15.8 1.0
OD2 B:ASP14 5.0 22.0 1.0

Reference:

E.Nowak, S.Panjikar, P.Konarev, D.I.Svergun, P.A.Tucker. The Structural Basis of Signal Transduction For the Response Regulator Prra From Mycobacterium Tuberculosis. J.Biol.Chem. V. 281 9659 2006.
ISSN: ISSN 0021-9258
PubMed: 16434396
DOI: 10.1074/JBC.M512004200
Page generated: Tue Aug 13 19:52:19 2024

Last articles

Na in 2HHA
Na in 2HCJ
Na in 2HEF
Na in 2HEE
Na in 2HED
Na in 2HEC
Na in 2HEB
Na in 2HC2
Na in 2HEA
Na in 2HDS
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy