Magnesium in PDB 1yt0: Crystal Structure of the Unliganded Form of GRP94, the Er HSP90: Basis For Nucleotide-Induced Conformational Change, GRP94N(Delta)41 Apo Crystal Soaked with Adp

The structure of Crystal Structure of the Unliganded Form of GRP94, the Er HSP90: Basis For Nucleotide-Induced Conformational Change, GRP94N(Delta)41 Apo Crystal Soaked with Adp, PDB code: 1yt0 was solved by D.E.Dollins, R.M.Immormino, D.T.Gewirth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	13.07 / 2.40
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	65.910, 94.860, 42.910, 90.00, 90.00, 90.00
R / Rfree (%)	22.8 / 26.4

The binding sites of Magnesium atom in the Crystal Structure of the Unliganded Form of GRP94, the Er HSP90: Basis For Nucleotide-Induced Conformational Change, GRP94N(Delta)41 Apo Crystal Soaked with Adp (pdb code 1yt0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Unliganded Form of GRP94, the Er HSP90: Basis For Nucleotide-Induced Conformational Change, GRP94N(Delta)41 Apo Crystal Soaked with Adp, PDB code: 1yt0:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Unliganded Form of GRP94, the Er HSP90: Basis For Nucleotide-Induced Conformational Change, GRP94N(Delta)41 Apo Crystal Soaked with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Unliganded Form of GRP94, the Er HSP90: Basis For Nucleotide-Induced Conformational Change, GRP94N(Delta)41 Apo Crystal Soaked with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg338 b:50.4 occ:1.00 O A:HOH4 2.4 51.0 1.0 O1B A:ADP339 2.4 52.5 1.0 O2A A:ADP339 2.6 50.1 1.0 O A:HOH5 2.6 49.5 1.0 OD1 A:ASN107 2.6 38.6 1.0 PB A:ADP339 3.2 51.9 1.0 O3B A:ADP339 3.3 53.4 1.0 O3A A:ADP339 3.6 50.9 1.0 PA A:ADP339 3.7 51.3 1.0 CG A:ASN107 3.7 40.2 1.0 O A:HOH9 4.2 43.8 1.0 OE1 A:GLU103 4.2 55.6 1.0 ND2 A:ASN107 4.3 39.5 1.0 OG A:SER106 4.3 48.2 1.0 CA A:GLY198 4.6 51.8 1.0 OD1 A:ASP110 4.6 51.3 1.0 O5' A:ADP339 4.7 52.5 1.0 O A:GLU103 4.7 41.5 1.0 O2B A:ADP339 4.7 50.0 1.0 O1A A:ADP339 4.8 52.0 1.0 CB A:SER106 4.9 47.6 1.0 N A:ASN107 4.9 43.5 1.0 CB A:ASN107 5.0 41.9 1.0 CA A:ASN107 5.0 41.8 1.0

D.E.Dollins, R.M.Immormino, D.T.Gewirth. Structure of Unliganded GRP94, the Endoplasmic Reticulum HSP90: Basis For Nucleotide-Induced Conformational Change J.Biol.Chem. V. 280 30438 2005.
ISSN: ISSN 0021-9258
PubMed: 15951571
DOI: 10.1074/JBC.M503761200