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Magnesium in PDB 1yu1: Major Tropism Determinant P3C Variant

Protein crystallography data

The structure of Major Tropism Determinant P3C Variant, PDB code: 1yu1 was solved by S.A.Mcmahon, J.L.Miller, J.A.Lawton, P.Ghosh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.99 / 2.07
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 66.545, 66.545, 334.953, 90.00, 90.00, 120.00
R / Rfree (%) 18.2 / 22.1

Other elements in 1yu1:

The structure of Major Tropism Determinant P3C Variant also contains other interesting chemical elements:

Mercury (Hg) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Major Tropism Determinant P3C Variant (pdb code 1yu1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Major Tropism Determinant P3C Variant, PDB code: 1yu1:

Magnesium binding site 1 out of 1 in 1yu1

Go back to Magnesium Binding Sites List in 1yu1
Magnesium binding site 1 out of 1 in the Major Tropism Determinant P3C Variant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Major Tropism Determinant P3C Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg383

b:18.9
occ:0.33
O A:HOH400 2.3 22.5 1.0
O A:PHE313 2.4 17.7 1.0
C A:PHE313 3.6 17.5 1.0
N A:PHE313 4.0 19.2 1.0
O A:HOH407 4.2 21.3 0.3
CA A:PHE313 4.2 18.5 1.0
CB A:PHE313 4.6 18.6 1.0
N A:GLY314 4.6 17.3 1.0
CG A:GLU312 4.9 27.3 1.0
CA A:GLY314 5.0 16.9 1.0

Reference:

S.A.Mcmahon, J.L.Miller, J.A.Lawton, D.E.Kerkow, A.Hodes, M.A.Marti-Renom, S.Doulatov, E.Narayanan, A.Sali, J.F.Miller, P.Ghosh. The C-Type Lectin Fold As An Evolutionary Solution For Massive Sequence Variation Nat.Struct.Mol.Biol. V. 12 886 2005.
ISSN: ISSN 1545-9993
PubMed: 16170324
DOI: 10.1038/NSMB992
Page generated: Mon Dec 14 07:10:29 2020

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