Atomistry » Magnesium » PDB 1yqz-1yzt » 1yu2
Atomistry »
  Magnesium »
    PDB 1yqz-1yzt »
      1yu2 »

Magnesium in PDB 1yu2: Major Tropism Determinant M1 Variant

Protein crystallography data

The structure of Major Tropism Determinant M1 Variant, PDB code: 1yu2 was solved by S.A.Mcmahon, J.L.Miller, J.A.Lawton, P.Ghosh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.64 / 1.86
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 93.534, 93.534, 103.146, 90.00, 90.00, 120.00
R / Rfree (%) 16.3 / 17.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Major Tropism Determinant M1 Variant (pdb code 1yu2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Major Tropism Determinant M1 Variant, PDB code: 1yu2:

Magnesium binding site 1 out of 1 in 1yu2

Go back to Magnesium Binding Sites List in 1yu2
Magnesium binding site 1 out of 1 in the Major Tropism Determinant M1 Variant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Major Tropism Determinant M1 Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:24.4
occ:0.33
O A:PHE313 2.3 27.4 1.0
O A:HOH485 2.5 30.5 1.0
C A:PHE313 3.4 27.9 1.0
N A:PHE313 3.9 26.6 1.0
CA A:PHE313 4.1 27.0 1.0
O A:HOH520 4.4 31.0 0.3
N A:GLY314 4.4 29.0 1.0
CB A:PHE313 4.5 26.9 1.0
CA A:GLY314 4.7 30.1 1.0
CG A:GLU312 5.0 29.1 1.0

Reference:

S.A.Mcmahon, J.L.Miller, J.A.Lawton, D.E.Kerkow, A.Hodes, M.A.Marti-Renom, S.Doulatov, E.Narayanan, A.Sali, J.F.Miller, P.Ghosh. The C-Type Lectin Fold As An Evolutionary Solution For Massive Sequence Variation Nat.Struct.Mol.Biol. V. 12 886 2005.
ISSN: ISSN 1545-9993
PubMed: 16170324
DOI: 10.1038/NSMB992
Page generated: Tue Aug 13 19:53:32 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy