Magnesium in PDB 1yu9: Gppnhp-Bound RAB4A

The structure of Gppnhp-Bound RAB4A, PDB code: 1yu9 was solved by S.Eathiraj, X.Pan, C.Ritacco, D.G.Lambright, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	7.00 / 2.07
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	68.808, 68.808, 90.920, 90.00, 90.00, 90.00
R / Rfree (%)	15.6 / 19.5

The binding sites of Magnesium atom in the Gppnhp-Bound RAB4A (pdb code 1yu9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Gppnhp-Bound RAB4A, PDB code: 1yu9:

Magnesium binding site 1 out of 1 in the Gppnhp-Bound RAB4A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Gppnhp-Bound RAB4A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:18.1 occ:1.00 O2G A:GNP700 2.0 16.4 1.0 O A:HOH706 2.0 12.7 1.0 OG A:SER22 2.0 13.8 1.0 O2B A:GNP700 2.0 11.9 1.0 OG1 A:THR40 2.1 17.9 1.0 O A:HOH716 2.2 13.0 1.0 CB A:THR40 3.1 19.3 1.0 CB A:SER22 3.2 13.5 1.0 PG A:GNP700 3.2 16.8 1.0 PB A:GNP700 3.2 14.1 1.0 N3B A:GNP700 3.4 14.4 1.0 N A:THR40 3.6 20.1 1.0 N A:SER22 3.9 13.2 1.0 CA A:THR40 3.9 19.5 1.0 O3G A:GNP700 3.9 15.0 1.0 CA A:SER22 4.1 13.0 1.0 OD1 A:ASP63 4.1 14.3 1.0 OD2 A:ASP63 4.1 17.0 1.0 O A:HOH727 4.1 23.0 1.0 O2A A:GNP700 4.2 13.7 1.0 O1B A:GNP700 4.2 12.2 1.0 O3A A:GNP700 4.3 12.7 1.0 CG2 A:THR40 4.3 19.7 1.0 O1G A:GNP700 4.4 15.8 1.0 CG A:ASP63 4.5 13.9 1.0 PA A:GNP700 4.5 15.1 1.0 O A:ASN38 4.6 25.3 1.0 O1A A:GNP700 4.6 14.2 1.0 C A:HIS39 4.7 21.5 1.0 O A:THR64 4.8 15.1 1.0 O A:HOH713 4.9 13.3 1.0 CB A:LYS21 4.9 13.0 1.0 O A:HOH743 4.9 30.3 1.0 C A:LYS21 5.0 12.9 1.0

S.Eathiraj, X.Pan, C.Ritacco, D.G.Lambright. Structural Basis of Family-Wide Rab Gtpase Recognition By Rabenosyn-5. Nature V. 436 415 2005.
ISSN: ISSN 0028-0836
PubMed: 16034420
DOI: 10.1038/NATURE03798