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Magnesium in PDB 1yun: Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase From Pseudomonas Aeruginosa

Enzymatic activity of Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase From Pseudomonas Aeruginosa

All present enzymatic activity of Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase From Pseudomonas Aeruginosa:
2.7.7.18;

Protein crystallography data

The structure of Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase From Pseudomonas Aeruginosa, PDB code: 1yun was solved by H.J.Yoon, H.L.Kim, B.Mikami, S.W.Suh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.00
Space group P 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 65.189, 65.199, 110.121, 90.00, 90.00, 90.00
R / Rfree (%) n/a / 26.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase From Pseudomonas Aeruginosa (pdb code 1yun). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase From Pseudomonas Aeruginosa, PDB code: 1yun:

Magnesium binding site 1 out of 1 in 1yun

Go back to Magnesium Binding Sites List in 1yun
Magnesium binding site 1 out of 1 in the Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase From Pseudomonas Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg230

b:37.0
occ:1.00
 O1B B:ATP1220 2.3 40.8 1.0
N B:ALA179 2.5 21.9 1.0
NE2 B:HIS16 2.6 20.5 1.0
CA B:SER178 3.0 21.9 1.0
O2B B:ATP1220 3.0 62.8 1.0
PB B:ATP1220 3.1 74.8 1.0
C B:SER178 3.2 17.6 1.0
O B:HOH364 3.3 20.3 1.0
CD2 B:HIS16 3.4 17.6 1.0
CB B:SER178 3.5 24.8 1.0
CE1 B:HIS16 3.7 16.9 1.0
CA B:ALA179 3.7 25.3 1.0
CB B:ALA179 3.8 22.4 1.0
O B:VAL177 4.0 19.7 1.0
O3B B:ATP1220 4.1 0.8 1.0
CE1 B:HIS19 4.2 15.9 1.0
O1G B:ATP1220 4.2 0.2 1.0
N7 B:ATP1220 4.2 44.3 1.0
N B:SER178 4.2 16.7 1.0
NE2 B:HIS19 4.3 11.8 1.0
O B:SER178 4.4 15.1 1.0
O3A B:ATP1220 4.4 74.5 1.0
C8 B:ATP1220 4.5 45.3 1.0
C B:VAL177 4.5 11.8 1.0
CG B:HIS16 4.6 22.1 1.0
OG B:SER178 4.7 20.6 1.0
N B:THR180 4.7 13.3 1.0
ND1 B:HIS16 4.7 26.7 1.0
O B:HOH524 4.7 29.4 1.0
PG B:ATP1220 4.7 0.6 1.0
C B:ALA179 4.8 25.8 1.0

Reference:

H.J.Yoon, H.L.Kim, B.Mikami, S.W.Suh. Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase From Pseudomonas Aeruginosa in Its Apo and Substrate-Complexed Forms Reveals A Fully Open Conformation J.Mol.Biol. V. 351 258 2005.
ISSN: ISSN 0022-2836
PubMed: 16009375
DOI: 10.1016/J.JMB.2005.06.001
Page generated: Tue Aug 13 19:54:02 2024

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