Magnesium in PDB 1yxo: Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein Pdxa PA0593

All present enzymatic activity of Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein Pdxa PA0593:
1.1.1.262;

The structure of Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein Pdxa PA0593, PDB code: 1yxo was solved by Y.Liu, X.Xu, A.Dong, M.Kudritskam, A.Savchenko, E.F.Pai, A.Joachimiak, A.Edwards, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.68 / 2.01
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	54.259, 59.307, 199.111, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 24.3

The binding sites of Magnesium atom in the Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein Pdxa PA0593 (pdb code 1yxo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein Pdxa PA0593, PDB code: 1yxo:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein Pdxa PA0593


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein Pdxa PA0593 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg5000 b:23.9 occ:1.00 O A:HOH4059 1.9 21.8 1.0 NE2 B:HIS1210 2.1 20.1 1.0 O A:EOH3000 2.2 33.9 1.0 O A:HOH4033 2.3 18.5 1.0 NE2 A:HIS1265 2.3 18.3 1.0 C2 A:EOH3000 2.4 31.7 1.0 C1 A:EOH3000 2.8 31.4 1.0 CE1 B:HIS1210 3.0 23.5 1.0 CD2 B:HIS1210 3.1 22.1 1.0 CE1 A:HIS1265 3.3 19.5 1.0 CD2 A:HIS1265 3.3 18.8 1.0 NE2 A:HIS1165 3.9 29.3 1.0 ND1 B:HIS1210 4.1 24.1 1.0 OD2 A:ASP1295 4.1 31.0 1.0 CG B:HIS1210 4.2 22.3 1.0 CD2 A:HIS1165 4.3 29.3 1.0 CD1 A:LEU1269 4.3 20.4 1.0 ND1 A:HIS1265 4.4 16.2 1.0 OD2 B:ASP1246 4.4 24.3 1.0 CG A:HIS1265 4.4 17.9 1.0 OD1 A:ASP1295 4.5 32.2 1.0 CG A:ASP1295 4.7 32.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein Pdxa PA0593


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein Pdxa PA0593 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg5001 b:32.4 occ:1.00 O B:HOH4073 2.1 24.2 1.0 NE2 A:HIS1210 2.1 23.6 1.0 O A:HOH4139 2.2 29.0 1.0 NE2 B:HIS1265 2.5 20.5 1.0 C2 B:EOH3001 2.5 40.2 1.0 O B:EOH3001 2.6 43.8 1.0 CE1 A:HIS1210 3.0 23.0 1.0 C1 B:EOH3001 3.1 42.6 1.0 CD2 A:HIS1210 3.1 22.9 1.0 NE2 B:HIS1165 3.2 31.3 1.0 CD2 B:HIS1265 3.3 19.5 1.0 CE1 B:HIS1265 3.5 19.2 1.0 CD2 B:HIS1165 3.9 29.6 1.0 OD1 B:ASP1295 4.1 31.5 1.0 OD2 B:ASP1295 4.1 33.2 1.0 ND1 A:HIS1210 4.1 25.1 1.0 CG A:HIS1210 4.2 23.2 1.0 CE1 B:HIS1165 4.2 32.0 1.0 CG B:ASP1295 4.5 30.9 1.0 CG B:HIS1265 4.5 19.0 1.0 ND1 B:HIS1265 4.6 17.9 1.0 OD2 A:ASP1246 4.7 27.9 1.0 CD2 B:LEU1269 4.7 30.5 1.0 C1 A:EOH3003 4.7 43.9 1.0 O B:HOH4325 4.9 40.4 1.0

Y.Liu, X.Xu, A.Dong, M.Kudritskam, A.Savchenko, E.F.Pai, A.Edwards. Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein Pdxa PA0593 To Be Published.