Magnesium in the structure of Gdp-Bound RAB14 Gtpase (pdb 1z0f)

The binding sites of Magnesium atom in the structure of Gdp-Bound RAB14 Gtpase (pdb code 1z0f). This binding sites where shown with 5.0 Angstroms radius around Magnesium atom. The 1z0f structure was solved by S.EATHIRAJ, X.PAN, C.RITACCO, D.G.LAMBRIGHT, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 12.0-2.1 Space group P1211 a (A) 43.065 b (A) 40.780 c (A) 47.678 alpha (°) 90.00 beta (°) 108.45 gamma (°) 90.00 Rfactor (%) 20.7 Rfree (%) 25.7 Magnesium Binding Sites: Magnesium binding site 1 out of 1 in 1z0f Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Magnesium in the PDB 1z0f. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Lys24, A: Ser25, A: Gly45, A: Val46, A: Asp66, A: Gdp200, A: Hoh205, A: Hoh240, A: Hoh247, A: Hoh257, A: Hoh268, conact list: Atom Atom Distance (A) Mg CB A:Lys24 4.99 Mg CE A:Lys24 4.90 Mg N A:Ser25 4.17 Mg CB A:Ser25 3.61 Mg OG A:Ser25 2.49 Mg CA A:Ser25 4.39 Mg O A:Gly45 4.73 Mg O A:Val46 4.77 Mg CB A:Asp66 4.69 Mg OD2 A:Asp66 2.36 Mg OD1 A:Asp66 4.10 Mg CG A:Asp66 3.54 Mg O3B A:Gdp200 3.51 Mg PA A:Gdp200 4.93 Mg O2A A:Gdp200 4.46 Mg O1B A:Gdp200 4.43 Mg PB A:Gdp200 3.49 Mg O2B A:Gdp200 2.35 Mg O3A A:Gdp200 4.64 Mg O A:Hoh205 2.36 Mg O A:Hoh240 2.24 Mg O A:Hoh247 2.55 Mg O A:Hoh257 2.88 Mg O A:Hoh268 4.89 interactive model: