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Magnesium in the structure of Gdp-Bound RAB21 Gtpase (pdb 1z0i)

The binding sites of Magnesium atom in the structure of Gdp-Bound RAB21 Gtpase (pdb code 1z0i). This binding sites where shown with 5.0 Angstroms radius around Magnesium atom.
The 1z0i structure was solved by S.EATHIRAJ, X.PAN, C.RITACCO, D.G.LAMBRIGHT, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)12.0-2.3
Space groupC2221
a (A)36.295
b (A)88.861
c (A)118.030
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)22.9
Rfree (%)27.8

Magnesium Binding Sites:

Magnesium binding site 1 out of 1 in 1z0i

Magnesium binding site 1 out of 1 in 1z0i
Click to enlarge
stereopicture of Magnesium binding site 1 out of 1 in 1z0i
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Magnesium in the PDB 1z0i. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Lys32, A: Thr33, A: Thr50, A: Asp74, A: Thr75, A: Ala76, A: Gdp200, A: Hoh217, A: Hoh221, A: Hoh222, A: Hoh228, A: Hoh229, A: Hoh286, A: Hoh289, A: Hoh320,

conact list:

AtomAtomDistance (A)
MgNZ A:Lys324.86
MgN A:Thr334.15
MgCB A:Thr333.40
MgCG2 A:Thr334.36
MgOG1 A:Thr332.14
MgCA A:Thr334.35
MgO A:Thr504.58
MgOD2 A:Asp744.35
MgOD1 A:Asp744.00
MgCG A:Asp744.62
MgO A:Thr754.14
MgC A:Thr754.83
MgCA A:Ala764.52
MgO3B A:Gdp2002.28
MgPA A:Gdp2004.77
MgO2A A:Gdp2004.26
MgO1B A:Gdp2003.57
MgPB A:Gdp2003.48
MgO2B A:Gdp2004.42
MgO3A A:Gdp2004.58
MgO1A A:Gdp2004.92
MgO A:Hoh2172.51
MgO A:Hoh2214.26
MgO A:Hoh2221.93
MgO A:Hoh2282.41
MgO A:Hoh2292.20
MgO A:Hoh2864.01
MgO A:Hoh2893.96
MgO A:Hoh3204.28

interactive model:

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