Magnesium in the structure of Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed With Gspp and 1,6-Dihydroxynaphtalene (pdb 1zb6)

The binding sites of Magnesium atom in the structure of Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed With Gspp and 1,6-Dihydroxynaphtalene (pdb code 1zb6). This binding sites where shown with 5.0 Angstroms radius around Magnesium atom. The 1zb6 structure was solved by T.KUZUYAMA, J.P.NOEL, S.B.RICHARD, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 29.7-1.9 Space group P21212 a (A) 71.319 b (A) 90.243 c (A) 47.513 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 23.3 Rfree (%) 26.3 Magnesium Binding Sites: Magnesium binding site 1 out of 1 in 1zb6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Magnesium in the PDB 1zb6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp62, A: Asp110, A: Lys118, A: Gst502, A: Hoh518, A: Hoh592, A: Hoh595, A: Hoh598, A: Hoh603, A: Hoh611, A: Hoh624, A: Hoh675, conact list: Atom Atom Distance (A) Mg CB A:Asp62 3.64 Mg OD2 A:Asp62 2.16 Mg OD1 A:Asp62 4.33 Mg CG A:Asp62 3.22 Mg OD2 A:Asp110 4.34 Mg CE A:Lys118 4.42 Mg NZ A:Lys118 3.78 Mg S1 A:Gst502 4.20 Mg O3B A:Gst502 2.12 Mg C1 A:Gst502 4.64 Mg PA A:Gst502 4.53 Mg O2A A:Gst502 4.16 Mg O1B A:Gst502 4.45 Mg PB A:Gst502 3.59 Mg O2B A:Gst502 4.42 Mg O3A A:Gst502 4.20 Mg O A:Hoh518 4.71 Mg O A:Hoh592 4.94 Mg O A:Hoh595 2.03 Mg O A:Hoh598 2.20 Mg O A:Hoh603 4.83 Mg O A:Hoh611 2.27 Mg O A:Hoh624 4.76 Mg O A:Hoh675 4.10 interactive model: