The binding sites of Magnesium atom in the structure of Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)- Ethanoic Acid Complex (pdb code 1zd2). This binding sites where shown with 5.0 Angstroms radius around Magnesium atom. The 1zd2 structure was solved by G.A.GOMEZ, C.MORISSEAU, B.D.HAMMOCK, D.W.CHRISTIANSON, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A) | 50.0-3.0 | Space group | P6522 | a (A) | 92.240 | b (A) | 92.240 | c (A) | 243.360 | alpha (°) | 90.00 | beta (°) | 90.00 | gamma (°) | 120.00 | Rfactor (%) | 23.3 | Rfree (%) | 28.3 |
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Magnesium binding site 1 out of 1 in 1zd2
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Magnesium in the PDB 1zd2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: P: Asp9, P: Asp11, P: Asp184, P: Asp185, P: Ile186, P: Asn189, P: Po4900, | conact list:
Atom | Atom | Distance (A) | Mg | CB P:Asp9 | 4.75 | Mg | OD2 P:Asp9 | 2.49 | Mg | OD1 P:Asp9 | 3.70 | Mg | CG P:Asp9 | 3.43 | Mg | O P:Asp11 | 2.83 | Mg | CB P:Asp11 | 4.52 | Mg | OD2 P:Asp11 | 4.95 | Mg | C P:Asp11 | 4.02 | Mg | CA P:Asp11 | 4.75 | Mg | OD2 P:Asp184 | 4.56 | Mg | OD1 P:Asp184 | 3.10 | Mg | CG P:Asp184 | 4.16 | Mg | N P:Asp185 | 4.40 | Mg | CB P:Asp185 | 4.47 | Mg | OD2 P:Asp185 | 3.40 | Mg | OD1 P:Asp185 | 2.11 | Mg | CG P:Asp185 | 3.10 | Mg | CA P:Asp185 | 4.89 | Mg | N P:Ile186 | 4.61 | Mg | CB P:Ile186 | 4.58 | Mg | CD1 P:Ile186 | 3.73 | Mg | CG1 P:Ile186 | 3.98 | Mg | ND2 P:Asn189 | 4.74 | Mg | O1 P:Po4900 | 4.08 | Mg | O2 P:Po4900 | 4.59 | Mg | P P:Po4900 | 3.51 | Mg | O4 P:Po4900 | 2.15 | Mg | O3 P:Po4900 | 3.99 |
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