Magnesium in the structure of Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)- Ethanoic Acid Complex (pdb 1zd2)

The binding sites of Magnesium atom in the structure of Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)- Ethanoic Acid Complex (pdb code 1zd2). This binding sites where shown with 5.0 Angstroms radius around Magnesium atom. The 1zd2 structure was solved by G.A.GOMEZ, C.MORISSEAU, B.D.HAMMOCK, D.W.CHRISTIANSON, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 50.0-3.0 Space group P6522 a (A) 92.240 b (A) 92.240 c (A) 243.360 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) 23.3 Rfree (%) 28.3 Magnesium Binding Sites: Magnesium binding site 1 out of 1 in 1zd2 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Magnesium in the PDB 1zd2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: P: Asp9, P: Asp11, P: Asp184, P: Asp185, P: Ile186, P: Asn189, P: Po4900, conact list: Atom Atom Distance (A) Mg CB P:Asp9 4.75 Mg OD2 P:Asp9 2.49 Mg OD1 P:Asp9 3.70 Mg CG P:Asp9 3.43 Mg O P:Asp11 2.83 Mg CB P:Asp11 4.52 Mg OD2 P:Asp11 4.95 Mg C P:Asp11 4.02 Mg CA P:Asp11 4.75 Mg OD2 P:Asp184 4.56 Mg OD1 P:Asp184 3.10 Mg CG P:Asp184 4.16 Mg N P:Asp185 4.40 Mg CB P:Asp185 4.47 Mg OD2 P:Asp185 3.40 Mg OD1 P:Asp185 2.11 Mg CG P:Asp185 3.10 Mg CA P:Asp185 4.89 Mg N P:Ile186 4.61 Mg CB P:Ile186 4.58 Mg CD1 P:Ile186 3.73 Mg CG1 P:Ile186 3.98 Mg ND2 P:Asn189 4.74 Mg O1 P:Po4900 4.08 Mg O2 P:Po4900 4.59 Mg P P:Po4900 3.51 Mg O4 P:Po4900 2.15 Mg O3 P:Po4900 3.99 interactive model: