Atomistry » Magnesium » PDB 1z6n-1zk2 » 1zd3
Atomistry »
  Magnesium »
    PDB 1z6n-1zk2 »
      1zd3 »

Magnesium in PDB 1zd3: Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)- Butyric Acid Complex

Enzymatic activity of Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)- Butyric Acid Complex

All present enzymatic activity of Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)- Butyric Acid Complex:
3.3.2.3;

Protein crystallography data

The structure of Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)- Butyric Acid Complex, PDB code: 1zd3 was solved by G.A.Gomez, C.Morisseau, B.D.Hammock, D.W.Christianson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.30
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.410, 92.410, 243.316, 90.00, 90.00, 120.00
R / Rfree (%) 21.2 / 25.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)- Butyric Acid Complex (pdb code 1zd3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)- Butyric Acid Complex, PDB code: 1zd3:

Magnesium binding site 1 out of 1 in 1zd3

Go back to Magnesium Binding Sites List in 1zd3
Magnesium binding site 1 out of 1 in the Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)- Butyric Acid Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)- Butyric Acid Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg800

b:28.5
occ:1.00
O3 A:PO4900 2.0 83.8 1.0
OD2 A:ASP9 2.1 36.5 1.0
OD1 A:ASP185 2.2 38.5 1.0
O A:HOH721 2.4 46.3 1.0
O A:ASP11 2.4 35.6 1.0
CG A:ASP185 3.2 39.5 1.0
CG A:ASP9 3.3 35.7 1.0
P A:PO4900 3.4 84.1 1.0
OD2 A:ASP185 3.5 39.1 1.0
C A:ASP11 3.5 36.1 1.0
OD1 A:ASP184 3.7 40.8 1.0
OD1 A:ASP9 3.7 35.9 1.0
O4 A:PO4900 3.9 84.1 1.0
CB A:ASP11 4.0 36.3 1.0
CD1 A:ILE186 4.1 42.2 1.0
CA A:ASP11 4.2 35.7 1.0
O2 A:PO4900 4.3 84.7 1.0
O1 A:PO4900 4.3 84.0 1.0
CG1 A:ILE186 4.4 42.0 1.0
N A:ASP11 4.5 35.8 1.0
N A:ASP185 4.5 39.6 1.0
CB A:ASP9 4.5 34.9 1.0
CB A:ASP185 4.6 39.6 1.0
N A:GLY12 4.6 35.5 1.0
OD2 A:ASP11 4.6 35.5 1.0
CG A:ASP184 4.6 40.6 1.0
CA A:GLY12 4.8 35.4 1.0
CG A:ASP11 4.9 36.5 1.0
OD2 A:ASP184 5.0 40.3 1.0
N A:ILE186 5.0 40.6 1.0

Reference:

G.A.Gomez, C.Morisseau, B.D.Hammock, D.W.Christianson. Human Soluble Epoxide Hydrolase: Structural Basis of Inhibition By 4-(3-Cyclohexylureido)-Carboxylic Acids Protein Sci. V. 15 58 2006.
ISSN: ISSN 0961-8368
PubMed: 16322563
DOI: 10.1110/PS.051720206
Page generated: Tue Aug 13 20:08:19 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy