Magnesium in PDB 1zd4: Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-Hexanoic Acid Complex

All present enzymatic activity of Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-Hexanoic Acid Complex:
3.3.2.3;

The structure of Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-Hexanoic Acid Complex, PDB code: 1zd4 was solved by G.A.Gomez, C.Morisseau, B.D.Hammock, D.W.Christianson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.16 / 2.70
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	92.970, 92.970, 246.120, 90.00, 90.00, 120.00
R / Rfree (%)	23.3 / 28.3

The binding sites of Magnesium atom in the Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-Hexanoic Acid Complex (pdb code 1zd4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-Hexanoic Acid Complex, PDB code: 1zd4:

Magnesium binding site 1 out of 1 in the Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-Hexanoic Acid Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-Hexanoic Acid Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg800 b:39.0 occ:1.00 OD2 A:ASP9 2.1 72.6 1.0 OD1 A:ASP185 2.4 42.9 1.0 O A:ASP11 2.6 45.1 1.0 O1 A:PO4900 2.7 96.4 1.0 CG A:ASP9 3.3 72.6 1.0 CG A:ASP185 3.4 42.9 1.0 O3 A:PO4900 3.5 96.4 1.0 P A:PO4900 3.6 96.4 1.0 OD2 A:ASP185 3.6 42.9 1.0 OD1 A:ASP184 3.6 53.1 1.0 C A:ASP11 3.7 45.1 1.0 OD1 A:ASP9 3.8 72.6 1.0 O2 A:PO4900 4.0 96.4 1.0 CB A:ASP11 4.3 56.5 1.0 CG A:ASP184 4.4 53.1 1.0 CA A:ASP11 4.4 45.1 1.0 CB A:ASP9 4.5 72.6 1.0 OD2 A:ASP184 4.5 53.1 1.0 N A:ASP11 4.6 45.1 1.0 N A:ASP185 4.7 45.9 1.0 CB A:ASP185 4.7 42.9 1.0 N A:GLY12 4.8 39.2 1.0 OD2 A:ASP11 4.8 56.5 1.0 O4 A:PO4900 4.9 96.4 1.0 CA A:GLY12 4.9 39.2 1.0 CG1 A:ILE186 4.9 27.2 1.0

G.A.Gomez, C.Morisseau, B.D.Hammock, D.W.Christianson. Human Soluble Epoxide Hydrolase: Structural Basis of Inhibition By 4-(3-Cyclohexylureido)-Carboxylic Acids Protein Sci. V. 15 58 2006.
ISSN: ISSN 0961-8368
PubMed: 16322563
DOI: 10.1110/PS.051720206