Magnesium in PDB 1zd9: Structure of Human Adp-Ribosylation Factor-Like 10B

The structure of Structure of Human Adp-Ribosylation Factor-Like 10B, PDB code: 1zd9 was solved by J.Choe, A.Atanassova, C.Arrowsmith, A.Edwards, M.Sundstrom, A.Bochkarev, H.Park, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.05 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	61.731, 72.092, 36.416, 90.00, 90.00, 90.00
R / Rfree (%)	21.2 / 24.8

The binding sites of Magnesium atom in the Structure of Human Adp-Ribosylation Factor-Like 10B (pdb code 1zd9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Human Adp-Ribosylation Factor-Like 10B, PDB code: 1zd9:

Magnesium binding site 1 out of 1 in the Structure of Human Adp-Ribosylation Factor-Like 10B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Human Adp-Ribosylation Factor-Like 10B within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:21.0 occ:1.00 OG1 A:THR33 2.2 14.2 1.0 O A:HOH382 2.2 27.7 1.0 O A:HOH400 2.3 22.0 1.0 O1B A:GDP201 2.3 15.2 1.0 O A:HOH337 2.3 20.3 1.0 O A:HOH322 2.5 23.4 1.0 CB A:THR33 3.3 14.7 1.0 PB A:GDP201 3.5 15.8 1.0 O3B A:GDP201 3.6 17.8 1.0 N A:THR33 4.0 14.1 1.0 O A:HOH352 4.2 21.8 1.0 CA A:THR33 4.2 14.4 1.0 O A:HOH314 4.3 20.6 1.0 OD2 A:ASP70 4.3 16.9 1.0 CG2 A:THR33 4.3 14.1 1.0 O2A A:GDP201 4.3 18.0 1.0 OD1 A:ASP70 4.5 16.9 1.0 O3A A:GDP201 4.6 15.4 1.0 O2B A:GDP201 4.6 13.9 1.0 O A:HOH348 4.6 25.1 1.0 O A:ILE49 4.7 35.9 1.0 OG1 A:THR51 4.7 31.1 1.0 PA A:GDP201 4.7 16.6 1.0 CA A:THR51 4.7 29.9 1.0 O A:HOH401 4.8 38.2 1.0 O1A A:GDP201 4.8 17.1 1.0 CG A:ASP70 4.8 15.0 1.0 O A:PRO50 4.9 32.6 1.0 CB A:LYS32 5.0 13.3 1.0

A.Atanassova, J.Choe, C.Arrowsmith, A.Edwards, M.Sundstrom, A.Bochkarev, H.Park. Structure of Human Adp-Ribosylation Factor-Like 10B To Be Published.