Magnesium in PDB 1zjj: Crystal Structure of Hypothetical Protein PH1952 From Pyrococcus Horikoshii OT3

The structure of Crystal Structure of Hypothetical Protein PH1952 From Pyrococcus Horikoshii OT3, PDB code: 1zjj was solved by H.Yamamoto, N.Kunishima, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.97 / 1.85
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.717, 75.743, 79.784, 90.00, 103.21, 90.00
R / Rfree (%)	19.5 / 22.1

The binding sites of Magnesium atom in the Crystal Structure of Hypothetical Protein PH1952 From Pyrococcus Horikoshii OT3 (pdb code 1zjj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Hypothetical Protein PH1952 From Pyrococcus Horikoshii OT3, PDB code: 1zjj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Hypothetical Protein PH1952 From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Hypothetical Protein PH1952 From Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:20.9 occ:1.00 O A:HOH1014 2.0 19.6 1.0 OD2 A:ASP7 2.1 19.3 1.0 O A:HOH1016 2.1 18.9 1.0 O A:ASP9 2.2 16.0 1.0 O A:HOH1003 2.2 21.2 1.0 OD1 A:ASP210 2.2 14.7 1.0 CG A:ASP7 3.1 18.7 1.0 CG A:ASP210 3.2 15.3 1.0 C A:ASP9 3.4 18.0 1.0 OD2 A:ASP210 3.4 18.9 1.0 OD1 A:ASP7 3.4 17.4 1.0 NE A:ARG211 4.1 37.4 1.0 CA A:ASP9 4.1 18.1 1.0 N A:ASP9 4.2 18.6 1.0 OD2 A:ASP215 4.2 21.1 1.0 CB A:ASP9 4.3 22.8 1.0 N A:GLY10 4.4 15.2 1.0 CB A:ASP7 4.4 17.1 1.0 O A:HOH1106 4.4 28.1 1.0 CG A:ARG211 4.5 30.1 1.0 CB A:ASP210 4.5 16.2 1.0 O A:HOH1037 4.5 26.4 1.0 CD A:ARG211 4.5 32.5 1.0 CA A:GLY10 4.5 16.2 1.0 O A:HOH1198 4.5 34.2 1.0 CG2 A:VAL11 4.6 17.1 1.0 N A:ASP210 4.6 16.5 1.0 C A:MET8 4.8 19.1 1.0 O A:HOH1006 4.8 19.7 1.0 O A:HOH1002 4.9 16.2 1.0 C A:GLY10 5.0 16.5 1.0 N A:MET8 5.0 18.6 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Hypothetical Protein PH1952 From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Hypothetical Protein PH1952 From Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1002 b:21.9 occ:1.00 O B:HOH1004 2.0 13.2 1.0 O B:HOH1016 2.1 16.8 1.0 O B:HOH1006 2.2 18.1 1.0 OD2 B:ASP7 2.2 19.6 1.0 OD1 B:ASP210 2.3 14.9 1.0 O B:ASP9 2.3 16.3 1.0 CG B:ASP7 3.1 20.5 1.0 CG B:ASP210 3.2 19.1 1.0 OD1 B:ASP7 3.4 18.6 1.0 C B:ASP9 3.5 18.4 1.0 OD2 B:ASP210 3.5 17.7 1.0 OD2 B:ASP215 4.1 13.9 1.0 NE B:ARG211 4.2 16.1 1.0 O B:HOH1032 4.2 15.8 1.0 CA B:ASP9 4.2 19.1 1.0 N B:ASP9 4.3 18.8 1.0 CB B:ASP9 4.4 20.1 1.0 O B:HOH1003 4.4 17.9 1.0 CB B:ASP7 4.4 17.3 1.0 CD B:ARG211 4.5 18.0 1.0 CG B:ARG211 4.5 19.9 1.0 N B:GLY10 4.5 18.0 1.0 O B:HOH1008 4.5 17.1 1.0 CB B:ASP210 4.6 18.7 1.0 CG2 B:VAL11 4.6 18.3 1.0 CA B:GLY10 4.7 17.5 1.0 O B:HOH1005 4.7 9.1 1.0 N B:ASP210 4.7 19.0 1.0 C B:MET8 4.8 18.7 1.0 O B:HOH1030 4.8 21.4 1.0 N B:MET8 5.0 16.1 1.0

H.Yamamoto, N.Kunishima. Crystal Structure of Hypothetical Protein PH1952 From Pyrococcus Horikoshii OT3 To Be Published.