Magnesium in PDB 1zke: 1.6 A Crystal Structure of A Protein HP1531 of Unknown Function From Helicobacter Pylori

The structure of 1.6 A Crystal Structure of A Protein HP1531 of Unknown Function From Helicobacter Pylori, PDB code: 1zke was solved by R.Zhang, T.Skarina, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	67.73 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	57.156, 73.262, 135.425, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 23.2

The binding sites of Magnesium atom in the 1.6 A Crystal Structure of A Protein HP1531 of Unknown Function From Helicobacter Pylori (pdb code 1zke). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the 1.6 A Crystal Structure of A Protein HP1531 of Unknown Function From Helicobacter Pylori, PDB code: 1zke:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the 1.6 A Crystal Structure of A Protein HP1531 of Unknown Function From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 1.6 A Crystal Structure of A Protein HP1531 of Unknown Function From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:18.9 occ:1.00 O B:HOH965 1.7 19.0 1.0 O B:HOH824 3.0 21.7 1.0 OG B:SER29 3.7 5.0 1.0 O F:HOH137 3.7 29.7 1.0 O B:HOH826 3.7 16.1 1.0 NE2 F:HIS0 4.1 6.4 1.0 CB B:SER29 4.2 4.5 1.0 CA B:GLY31 4.2 4.3 1.0 N B:GLY31 4.3 4.1 1.0 O F:HOH117 4.8 19.1 1.0 CD2 F:HIS0 4.8 5.9 1.0 N B:ASP32 5.0 4.7 1.0 C B:GLY31 5.0 4.7 1.0

Magnesium binding site 2 out of 4 in the 1.6 A Crystal Structure of A Protein HP1531 of Unknown Function From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 1.6 A Crystal Structure of A Protein HP1531 of Unknown Function From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg802 b:57.5 occ:1.00 O A:HOH116 2.2 33.2 1.0 O C:HOH871 3.0 53.7 1.0 N C:GLY31 3.5 15.7 1.0 O C:HOH812 3.8 26.6 1.0 O A:HOH101 4.0 28.9 1.0 CB C:LEU30 4.1 15.0 1.0 N C:LEU30 4.2 15.3 1.0 CA C:GLY31 4.2 16.1 1.0 C C:LEU30 4.5 15.3 1.0 CB C:SER29 4.5 16.1 1.0 CA C:LEU30 4.5 14.9 1.0 OG C:SER29 4.8 16.5 1.0 O A:HOH144 4.8 48.7 1.0 N A:MET1 4.9 19.4 1.0 O A:HOH91 4.9 43.4 1.0 C C:SER29 5.0 15.3 1.0 O A:HOH142 5.0 46.6 1.0

Magnesium binding site 3 out of 4 in the 1.6 A Crystal Structure of A Protein HP1531 of Unknown Function From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 1.6 A Crystal Structure of A Protein HP1531 of Unknown Function From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg803 b:56.9 occ:1.00 CA D:GLY31 4.0 9.3 1.0 N D:GLY31 4.1 9.3 1.0 O D:HOH806 4.5 22.8 1.0 O E:HOH856 4.6 36.1 1.0 C D:LEU30 4.6 9.0 1.0 CE E:MET1 4.6 15.0 1.0 CG D:LEU30 4.6 8.9 1.0 CD2 D:LEU30 4.7 10.6 1.0 O D:HOH845 4.8 25.4 1.0 O D:LEU30 4.9 9.6 1.0 CB D:LEU30 4.9 8.6 1.0 O E:GLY75 4.9 11.9 1.0

Magnesium binding site 4 out of 4 in the 1.6 A Crystal Structure of A Protein HP1531 of Unknown Function From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 1.6 A Crystal Structure of A Protein HP1531 of Unknown Function From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg804 b:35.1 occ:1.00 O E:HOH884 1.8 44.6 1.0 O E:HOH815 3.5 16.1 1.0 OD1 E:ASN48 4.0 12.5 1.0 CA E:ASN48 4.4 9.9 1.0 O E:VAL47 4.7 11.9 1.0 CB E:ASN48 4.7 9.6 1.0 CG E:ASN48 4.8 10.3 1.0 N E:ASN48 4.8 10.3 1.0 O E:LYS45 4.9 15.4 1.0 C E:VAL47 4.9 11.6 1.0

R.Zhang, T.Skarina, A.Savchenko, A.Edwards, A.Joachimiak. 1.6A Crystal Structure of A Hypothetical Protein HP1531 From Helicobacter Pylori 26695 To Be Published.