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Magnesium in PDB 1zuk: Yeast BBC1 SH3 Domain Complexed with A Peptide From LAS17

Protein crystallography data

The structure of Yeast BBC1 SH3 Domain Complexed with A Peptide From LAS17, PDB code: 1zuk was solved by P.Kursula, I.Kursula, F.Lehmann, P.Zou, Y.H.Song, M.Wilmanns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 51.770, 78.500, 35.460, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 22.6

Other elements in 1zuk:

The structure of Yeast BBC1 SH3 Domain Complexed with A Peptide From LAS17 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Yeast BBC1 SH3 Domain Complexed with A Peptide From LAS17 (pdb code 1zuk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Yeast BBC1 SH3 Domain Complexed with A Peptide From LAS17, PDB code: 1zuk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1zuk

Go back to Magnesium Binding Sites List in 1zuk
Magnesium binding site 1 out of 2 in the Yeast BBC1 SH3 Domain Complexed with A Peptide From LAS17


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast BBC1 SH3 Domain Complexed with A Peptide From LAS17 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2001

b:25.8
occ:1.00
O A:HOH2049 2.0 22.7 1.0
O C:HOH29 2.0 27.9 1.0
O C:HOH17 2.0 24.7 1.0
O A:HOH2007 2.1 20.6 1.0
O C:HOH12 2.1 27.4 1.0
O C:HOH35 2.3 28.0 1.0
OE1 A:GLU41 3.6 34.7 1.0
OD2 A:ASP39 3.9 31.6 1.0
O C:HIS10 4.0 33.9 1.0
O A:HOH2058 4.2 36.0 1.0
OXT C:ARG11 4.2 31.4 1.0
O C:ARG11 4.2 32.1 1.0
O C:HOH20 4.4 43.8 1.0
CG A:ASP39 4.4 31.2 1.0
C C:ARG11 4.5 33.2 1.0
O A:HOH2019 4.7 39.8 1.0
OD1 A:ASP39 4.7 28.8 1.0
O C:HOH19 4.8 36.0 1.0
CD A:GLU41 4.8 30.2 1.0
O A:HOH2037 4.9 33.0 1.0
CD1 A:TRP42 5.0 31.9 1.0
C C:HIS10 5.0 33.4 1.0

Magnesium binding site 2 out of 2 in 1zuk

Go back to Magnesium Binding Sites List in 1zuk
Magnesium binding site 2 out of 2 in the Yeast BBC1 SH3 Domain Complexed with A Peptide From LAS17


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Yeast BBC1 SH3 Domain Complexed with A Peptide From LAS17 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2002

b:37.8
occ:1.00
O B:HOH2012 2.1 25.3 1.0
O B:HOH2079 2.1 27.0 1.0
O B:HOH2029 2.1 41.5 1.0
O B:HOH2062 2.2 36.2 1.0
O B:HOH2024 2.2 31.4 1.0
O B:HOH2076 2.3 34.1 1.0
O B:PRO7 4.3 29.0 1.0
O B:GLU5 4.3 31.5 1.0
O B:HOH2036 4.4 47.9 1.0
O B:VAL6 4.6 29.6 1.0
CD B:PRO7 4.7 28.9 1.0
CB B:GLU5 4.8 35.1 1.0
C B:VAL6 4.9 30.5 1.0
N B:PRO7 5.0 29.6 1.0

Reference:

P.Kursula, I.Kursula, F.Lehmann, P.Zou, Y.H.Song, M.Wilmanns. Structural Genomics of Yeast SH3 Domains To Be Published.
Page generated: Mon Dec 14 07:12:25 2020

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