Magnesium in PDB 1zz5: Molecular Recognition of Rna By Neomycin and A Restricted Neomycin Derivative

The structure of Molecular Recognition of Rna By Neomycin and A Restricted Neomycin Derivative, PDB code: 1zz5 was solved by Q.Zhao, F.Zhao, K.F.Blount, Q.Han, Y.Tor, T.Hermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 3.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.740, 50.750, 144.720, 90.00, 90.00, 90.00
R / Rfree (%)	23.3 / 28.1

The binding sites of Magnesium atom in the Molecular Recognition of Rna By Neomycin and A Restricted Neomycin Derivative (pdb code 1zz5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Molecular Recognition of Rna By Neomycin and A Restricted Neomycin Derivative, PDB code: 1zz5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Molecular Recognition of Rna By Neomycin and A Restricted Neomycin Derivative


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Molecular Recognition of Rna By Neomycin and A Restricted Neomycin Derivative within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg100 b:80.4 occ:1.00 O A:HOH108 2.0 80.4 1.0 O A:HOH107 2.0 80.4 1.0 O A:HOH109 2.0 80.4 1.0 O A:HOH106 2.1 80.4 1.0 O A:HOH110 2.2 80.4 1.0 O A:HOH105 2.2 80.4 1.0 O4 A:U6 4.9 79.2 1.0 N7 A:G4 4.9 70.7 1.0

Magnesium binding site 2 out of 2 in the Molecular Recognition of Rna By Neomycin and A Restricted Neomycin Derivative


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Molecular Recognition of Rna By Neomycin and A Restricted Neomycin Derivative within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg200 b:80.4 occ:1.00 O D:HOH203 2.0 80.4 1.0 O D:HOH202 2.0 80.4 1.0 O D:HOH204 2.0 80.4 1.0 O D:HOH201 2.1 80.4 1.0 O D:HOH205 2.2 80.4 1.0 O C:HOH47 2.2 80.4 1.0 O C:HOH48 4.6 80.4 1.0 N6 D:A29 5.0 76.0 1.0

F.Zhao, Q.Zhao, K.F.Blount, Q.Han, Y.Tor, T.Hermann. Molecular Recognition of Rna By Neomycin and A Restricted Neomycin Derivative Angew.Chem.Int.Ed.Engl. V. 44 5329 2005.
ISSN: ISSN 1433-7851
PubMed: 16037995
DOI: 10.1002/ANIE.200500903