Atomistry » Magnesium » PDB 208d-2a6e » 216d
Atomistry »
  Magnesium »
    PDB 208d-2a6e »
      216d »

Magnesium in PDB 216d: Crystal Structures of the B-Form Dna-Rna Chimer (5'-D(*Ip*)- R(*Cp*)-D(*Ip*Cp*Ip*Cp*Ip*C)-3') Complexed with Distamycin

Protein crystallography data

The structure of Crystal Structures of the B-Form Dna-Rna Chimer (5'-D(*Ip*)- R(*Cp*)-D(*Ip*Cp*Ip*Cp*Ip*C)-3') Complexed with Distamycin, PDB code: 216d was solved by X.Chen, B.Ramakrishnan, M.Sundaralingam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.73
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 27.920, 27.920, 57.700, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / n/a

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structures of the B-Form Dna-Rna Chimer (5'-D(*Ip*)- R(*Cp*)-D(*Ip*Cp*Ip*Cp*Ip*C)-3') Complexed with Distamycin (pdb code 216d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structures of the B-Form Dna-Rna Chimer (5'-D(*Ip*)- R(*Cp*)-D(*Ip*Cp*Ip*Cp*Ip*C)-3') Complexed with Distamycin, PDB code: 216d:

Magnesium binding site 1 out of 1 in 216d

Go back to Magnesium Binding Sites List in 216d
Magnesium binding site 1 out of 1 in the Crystal Structures of the B-Form Dna-Rna Chimer (5'-D(*Ip*)- R(*Cp*)-D(*Ip*Cp*Ip*Cp*Ip*C)-3') Complexed with Distamycin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structures of the B-Form Dna-Rna Chimer (5'-D(*Ip*)- R(*Cp*)-D(*Ip*Cp*Ip*Cp*Ip*C)-3') Complexed with Distamycin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg10

b:11.5
occ:1.00
OP2 A:DC6 2.0 9.0 1.0
O A:HOH14 2.1 7.8 1.0
O A:HOH23 2.2 12.5 1.0
O A:HOH19 2.2 10.6 1.0
P A:DC6 3.5 9.0 1.0
C3' A:DI5 4.1 9.0 1.0
O5' A:DC6 4.1 9.1 1.0
C2' A:DI5 4.2 8.9 1.0
O3' A:DI5 4.2 9.1 1.0
O A:HOH24 4.5 19.0 1.0
OP1 A:DC6 4.5 9.2 1.0
O A:HOH32 4.7 41.9 1.0

Reference:

X.Chen, B.Ramakrishnan, M.Sundaralingam. Crystal Structures of B-Form Dna-Rna Chimers Complexed with Distamycin. Nat.Struct.Biol. V. 2 733 1995.
ISSN: ISSN 1072-8368
PubMed: 7552741
DOI: 10.1038/NSB0995-733
Page generated: Mon Dec 14 07:12:47 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy