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Magnesium in PDB 2ajr: Crystal Structure of Possible 1-Phosphofructokinase (Ec 2.7.1.56) (TM0828) From Thermotoga Maritima at 2.46 A Resolution

Protein crystallography data

The structure of Crystal Structure of Possible 1-Phosphofructokinase (Ec 2.7.1.56) (TM0828) From Thermotoga Maritima at 2.46 A Resolution, PDB code: 2ajr was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.49 / 2.46
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 115.796, 115.796, 124.828, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 24

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Possible 1-Phosphofructokinase (Ec 2.7.1.56) (TM0828) From Thermotoga Maritima at 2.46 A Resolution (pdb code 2ajr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Possible 1-Phosphofructokinase (Ec 2.7.1.56) (TM0828) From Thermotoga Maritima at 2.46 A Resolution, PDB code: 2ajr:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2ajr

Go back to Magnesium Binding Sites List in 2ajr
Magnesium binding site 1 out of 2 in the Crystal Structure of Possible 1-Phosphofructokinase (Ec 2.7.1.56) (TM0828) From Thermotoga Maritima at 2.46 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Possible 1-Phosphofructokinase (Ec 2.7.1.56) (TM0828) From Thermotoga Maritima at 2.46 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg320

b:49.3
occ:1.00
O A:ARG295 2.4 38.9 1.0
O A:GLU297 2.5 38.7 1.0
O A:HIS255 2.6 37.4 1.0
O A:ALA292 2.8 38.5 1.0
C A:GLU297 3.4 38.5 1.0
C A:ARG295 3.6 36.7 1.0
C A:HIS255 3.6 37.1 1.0
C A:ALA292 3.9 35.1 1.0
C A:LYS296 4.0 37.5 1.0
O A:LEU257 4.1 40.2 1.0
O A:LYS296 4.1 36.9 1.0
CA A:HIS255 4.1 38.0 1.0
N A:LYS298 4.1 38.6 1.0
N A:GLU297 4.2 38.5 1.0
N A:TYR299 4.2 37.4 1.0
CB A:HIS255 4.2 39.1 1.0
CA A:LYS298 4.2 38.9 1.0
CA A:THR293 4.4 33.6 1.0
CA A:ARG295 4.4 36.7 1.0
N A:ARG295 4.4 37.1 1.0
CA A:GLU297 4.4 39.5 1.0
N A:LYS296 4.4 37.4 1.0
CA A:LYS296 4.5 38.1 1.0
N A:LEU256 4.6 37.3 1.0
C A:LYS298 4.6 39.6 1.0
N A:THR293 4.6 33.1 1.0
N A:LEU257 4.6 39.5 1.0
C A:THR293 4.7 33.5 1.0
CB A:ARG295 4.7 35.9 1.0
CB A:TYR299 4.8 37.8 1.0
O A:THR293 4.8 35.6 1.0
C A:LEU256 5.0 39.1 1.0
CA A:ALA292 5.0 34.3 1.0

Magnesium binding site 2 out of 2 in 2ajr

Go back to Magnesium Binding Sites List in 2ajr
Magnesium binding site 2 out of 2 in the Crystal Structure of Possible 1-Phosphofructokinase (Ec 2.7.1.56) (TM0828) From Thermotoga Maritima at 2.46 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Possible 1-Phosphofructokinase (Ec 2.7.1.56) (TM0828) From Thermotoga Maritima at 2.46 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg320

b:30.8
occ:1.00
O B:GLU297 2.3 39.5 1.0
O B:ARG295 2.3 40.4 1.0
O B:HIS255 2.5 36.0 1.0
O B:ALA292 2.7 35.6 1.0
C B:ARG295 3.4 38.2 1.0
C B:GLU297 3.5 39.4 1.0
C B:HIS255 3.5 36.4 1.0
C B:ALA292 3.7 33.7 1.0
C B:LYS296 4.0 39.0 1.0
CA B:HIS255 4.1 36.6 1.0
O B:LYS296 4.1 39.7 1.0
O B:LEU257 4.1 40.3 1.0
N B:GLU297 4.1 39.7 1.0
N B:TYR299 4.2 38.5 1.0
CB B:HIS255 4.2 35.7 1.0
CA B:ARG295 4.3 38.0 1.0
N B:ARG295 4.3 37.3 1.0
N B:LYS296 4.4 38.4 1.0
N B:LYS298 4.4 39.0 1.0
CA B:THR293 4.4 34.1 1.0
O B:HOH330 4.4 31.6 1.0
CB B:TYR299 4.4 38.1 1.0
CA B:LYS296 4.5 39.0 1.0
CA B:GLU297 4.5 40.2 1.0
N B:THR293 4.5 33.5 1.0
CA B:LYS298 4.5 38.6 1.0
CB B:ARG295 4.6 37.0 1.0
N B:LEU256 4.6 35.3 1.0
N B:LEU257 4.6 39.6 1.0
CA B:ALA292 4.7 32.5 1.0
C B:LYS298 4.8 40.1 1.0
C B:THR293 4.8 34.2 1.0
CA B:TYR299 4.9 39.0 1.0
CB B:ALA292 4.9 29.4 1.0
C B:LEU256 4.9 38.5 1.0
O B:TYR299 5.0 40.7 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Aug 13 21:32:01 2024

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