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Magnesium in PDB 2atv: The Crystal Structure of Human Rerg in the Gdp Bound State

Protein crystallography data

The structure of The Crystal Structure of Human Rerg in the Gdp Bound State, PDB code: 2atv was solved by A.P.Turnbull, E.Salah, G.Schoch, J.Elkins, N.Burgess, O.Gileadi, F.Vondelft, J.Weigelt, A.Edwards, C.Arrowsmith, M.Sundstrom, D.Doyle, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.07 / 1.90
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 76.405, 76.405, 107.876, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 23.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of Human Rerg in the Gdp Bound State (pdb code 2atv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of Human Rerg in the Gdp Bound State, PDB code: 2atv:

Magnesium binding site 1 out of 1 in 2atv

Go back to Magnesium Binding Sites List in 2atv
Magnesium binding site 1 out of 1 in the The Crystal Structure of Human Rerg in the Gdp Bound State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Human Rerg in the Gdp Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg175

b:29.1
occ:1.00
O A:HOH500 2.0 28.7 1.0
O3B A:GDP415 2.0 25.6 1.0
O A:HOH417 2.1 27.4 1.0
OG A:SER20 2.1 33.6 1.0
O A:HOH501 2.1 27.8 1.0
O A:HOH416 2.1 28.8 1.0
CB A:SER20 3.2 35.0 1.0
PB A:GDP415 3.3 27.9 1.0
O1B A:GDP415 3.6 30.8 1.0
N A:SER20 4.0 33.4 1.0
O2A A:GDP415 4.1 32.5 1.0
CA A:SER20 4.1 33.4 1.0
OD2 A:ASP60 4.1 39.4 1.0
O A:PRO37 4.2 36.5 1.0
O A:ASP36 4.2 35.9 1.0
O3A A:GDP415 4.3 29.4 1.0
CD2 A:TYR35 4.3 35.2 1.0
OD1 A:ASP60 4.3 40.1 1.0
O2B A:GDP415 4.4 28.7 1.0
CA A:PRO37 4.4 38.9 1.0
PA A:GDP415 4.5 29.7 1.0
O A:LEU39 4.6 36.1 1.0
O A:THR61 4.6 38.4 1.0
O1A A:GDP415 4.6 29.0 1.0
C A:PRO37 4.6 37.2 1.0
CE2 A:TYR35 4.6 36.4 1.0
CG A:ASP60 4.6 42.5 1.0
CB A:LYS19 4.9 31.5 1.0
O A:HOH428 5.0 34.3 1.0

Reference:

A.P.Turnbull, E.Salah, G.Schoch, J.Elkins, N.Burgess, O.Gileadi, F.Von Delft, J.Weigelt, A.Edwards, C.Arrowsmith, M.Sundstrom, D.Doyle. The Crystal Structure of Human Rerg in the Gdp Bound State To Be Published.
Page generated: Tue Aug 13 21:36:25 2024

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