Atomistry » Magnesium » PDB 2amc-2b2k » 2b0k
Atomistry »
  Magnesium »
    PDB 2amc-2b2k »
      2b0k »

Magnesium in PDB 2b0k: Crystal Structure of the DB921-D(Cgcgaattcgcg)2 Complex.

Protein crystallography data

The structure of Crystal Structure of the DB921-D(Cgcgaattcgcg)2 Complex., PDB code: 2b0k was solved by Y.Miao, M.P.Lee, G.N.Parkinson, A.Batista-Parra, M.A.Ismail, S.Neidle, D.W.Boykin, W.D.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.64
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 24.288, 40.068, 65.989, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 30

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the DB921-D(Cgcgaattcgcg)2 Complex. (pdb code 2b0k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the DB921-D(Cgcgaattcgcg)2 Complex., PDB code: 2b0k:

Magnesium binding site 1 out of 1 in 2b0k

Go back to Magnesium Binding Sites List in 2b0k
Magnesium binding site 1 out of 1 in the Crystal Structure of the DB921-D(Cgcgaattcgcg)2 Complex.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the DB921-D(Cgcgaattcgcg)2 Complex. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg26

b:20.9
occ:1.00
O B:HOH103 2.1 23.7 1.0
O A:HOH108 2.1 19.6 1.0
O B:HOH107 2.1 19.7 1.0
O A:HOH105 2.1 20.0 1.0
O B:HOH106 2.1 18.7 1.0
O A:HOH104 2.1 20.4 1.0
O B:HOH32 4.1 21.8 1.0
O6 B:DG22 4.1 18.1 1.0
O B:HOH28 4.1 18.7 1.0
O A:HOH43 4.3 29.4 1.0
O A:HOH34 4.3 22.9 1.0
O B:HOH46 4.3 29.5 1.0
C5 A:DC1 4.3 19.5 1.0
O6 A:DG2 4.5 15.4 1.0
N7 A:DG2 4.6 17.6 1.0
C6 A:DC1 4.8 21.8 1.0

Reference:

Y.Miao, M.P.Lee, G.N.Parkinson, A.Batista-Parra, M.A.Ismail, S.Neidle, D.W.Boykin, W.D.Wilson. Out-of-Shape Dna Minor Groove Binders: Induced Fit Interactions of Heterocyclic Dications with the Dna Minor Groove. Biochemistry V. 44 14701 2005.
ISSN: ISSN 0006-2960
PubMed: 16274217
DOI: 10.1021/BI051791Q
Page generated: Mon Dec 14 07:15:51 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy