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Magnesium in PDB 2bfr: The Macro Domain Is An Adp-Ribose Binding Module

Protein crystallography data

The structure of The Macro Domain Is An Adp-Ribose Binding Module, PDB code: 2bfr was solved by G.I.Karras, H.R.Buhecha, M.D.Allen, C.Pugieux, F.Sait, M.Bycroft, A.G.Ladurner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.50
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 87.840, 87.840, 61.069, 90.00, 90.00, 120.00
R / Rfree (%) 20.2 / 23.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Macro Domain Is An Adp-Ribose Binding Module (pdb code 2bfr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Macro Domain Is An Adp-Ribose Binding Module, PDB code: 2bfr:

Magnesium binding site 1 out of 1 in 2bfr

Go back to Magnesium Binding Sites List in 2bfr
Magnesium binding site 1 out of 1 in the The Macro Domain Is An Adp-Ribose Binding Module


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Macro Domain Is An Adp-Ribose Binding Module within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1194

b:29.5
occ:1.00
NE2 A:HIS77 3.6 31.4 1.0
N A:ILE103 4.1 29.6 1.0
CE1 A:HIS77 4.1 31.3 1.0
NZ A:LYS115 4.2 31.2 1.0
CA A:PRO102 4.4 25.9 1.0
CG1 A:ILE103 4.5 34.7 1.0
CB A:ILE103 4.7 30.6 1.0
CD1 A:ILE103 4.7 32.1 1.0
C A:PRO102 4.7 26.6 1.0
CB A:PRO102 4.7 27.8 1.0
CD2 A:HIS77 4.8 25.9 1.0
CD A:LYS115 4.8 27.0 1.0
CA A:ILE103 5.0 30.1 1.0

Reference:

G.I.Karras, G.Kustatscher, H.R.Buhecha, M.D.Allen, C.Pugieux, F.Sait, M.Bycroft, A.G.Ladurner. The Macro Domain Is An Adp-Ribose Binding Module. Embo J. V. 24 1911 2005.
ISSN: ISSN 0261-4189
PubMed: 15902274
DOI: 10.1038/SJ.EMBOJ.7600664
Page generated: Tue Aug 13 21:50:32 2024

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