Magnesium in PDB 2bhw: Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution
Protein crystallography data
The structure of Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution, PDB code: 2bhw
was solved by
J.Standfuss,
A.C.Terwisscha Van Scheltinga,
M.Lamborghini,
W.Kuehlbrandt,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
2.50
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
211.400,
128.000,
62.000,
90.00,
101.80,
90.00
|
R / Rfree (%)
|
21.96 /
24.1
|
Magnesium Binding Sites:
Magnesium binding site 1 out
of 42 in 2bhw
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Magnesium Binding Sites List in 2bhw
Magnesium binding site 1 out
of 42 in the Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg601
b:78.5
occ:1.00
|
MG
|
A:CLA601
|
0.0
|
78.5
|
1.0
|
ND
|
A:CLA601
|
2.0
|
78.2
|
1.0
|
NC
|
A:CLA601
|
2.1
|
77.3
|
1.0
|
NA
|
A:CLA601
|
2.1
|
78.4
|
1.0
|
NB
|
A:CLA601
|
2.1
|
73.0
|
1.0
|
OE2
|
A:GLU180
|
2.2
|
92.9
|
1.0
|
C4D
|
A:CLA601
|
2.9
|
79.5
|
1.0
|
C1B
|
A:CLA601
|
3.1
|
73.5
|
1.0
|
C1A
|
A:CLA601
|
3.1
|
80.6
|
1.0
|
C1D
|
A:CLA601
|
3.1
|
80.4
|
1.0
|
C1C
|
A:CLA601
|
3.1
|
74.5
|
1.0
|
C4A
|
A:CLA601
|
3.1
|
76.2
|
1.0
|
C4C
|
A:CLA601
|
3.1
|
78.5
|
1.0
|
C4B
|
A:CLA601
|
3.1
|
71.9
|
1.0
|
CD
|
A:GLU180
|
3.3
|
0.3
|
1.0
|
CHA
|
A:CLA601
|
3.4
|
81.9
|
1.0
|
CHB
|
A:CLA601
|
3.4
|
75.5
|
1.0
|
CHD
|
A:CLA601
|
3.5
|
80.2
|
1.0
|
CHC
|
A:CLA601
|
3.5
|
75.5
|
1.0
|
CG
|
A:GLU180
|
4.1
|
84.9
|
1.0
|
C18
|
A:LUX501
|
4.1
|
0.5
|
1.0
|
C3D
|
A:CLA601
|
4.2
|
81.0
|
1.0
|
OE1
|
A:GLU180
|
4.2
|
90.4
|
1.0
|
NE
|
A:ARG70
|
4.3
|
72.8
|
1.0
|
C2D
|
A:CLA601
|
4.3
|
79.5
|
1.0
|
C2B
|
A:CLA601
|
4.3
|
72.1
|
1.0
|
C2C
|
A:CLA601
|
4.3
|
73.6
|
1.0
|
C3C
|
A:CLA601
|
4.3
|
76.9
|
1.0
|
C3B
|
A:CLA601
|
4.4
|
70.6
|
1.0
|
C2A
|
A:CLA601
|
4.4
|
78.8
|
1.0
|
C3A
|
A:CLA601
|
4.4
|
75.4
|
1.0
|
CZ
|
A:ARG70
|
4.8
|
79.0
|
1.0
|
NH2
|
A:ARG70
|
4.8
|
73.0
|
1.0
|
O2A
|
A:CLA601
|
4.8
|
77.8
|
1.0
|
CBD
|
A:CLA601
|
4.9
|
84.7
|
1.0
|
CD
|
A:ARG70
|
4.9
|
69.5
|
1.0
|
CBA
|
A:CLA601
|
5.0
|
75.9
|
1.0
|
CG
|
A:ARG70
|
5.0
|
66.8
|
1.0
|
CB
|
A:GLU180
|
5.0
|
80.8
|
1.0
|
|
Magnesium binding site 2 out
of 42 in 2bhw
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Magnesium Binding Sites List in 2bhw
Magnesium binding site 2 out
of 42 in the Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg602
b:86.0
occ:1.00
|
MG
|
A:CLA602
|
0.0
|
86.0
|
1.0
|
ND
|
A:CLA602
|
2.0
|
84.3
|
1.0
|
OD1
|
A:ASN183
|
2.1
|
82.9
|
1.0
|
NA
|
A:CLA602
|
2.1
|
84.9
|
1.0
|
NB
|
A:CLA602
|
2.1
|
82.4
|
1.0
|
NC
|
A:CLA602
|
2.1
|
80.4
|
1.0
|
C4D
|
A:CLA602
|
2.9
|
86.3
|
1.0
|
C1B
|
A:CLA602
|
3.1
|
85.4
|
1.0
|
C4A
|
A:CLA602
|
3.1
|
86.1
|
1.0
|
C4B
|
A:CLA602
|
3.1
|
81.6
|
1.0
|
C1D
|
A:CLA602
|
3.1
|
84.5
|
1.0
|
C1A
|
A:CLA602
|
3.1
|
86.0
|
1.0
|
C1C
|
A:CLA602
|
3.1
|
79.5
|
1.0
|
C4C
|
A:CLA602
|
3.1
|
80.6
|
1.0
|
CG
|
A:ASN183
|
3.3
|
84.3
|
1.0
|
CHB
|
A:CLA602
|
3.4
|
87.2
|
1.0
|
CHA
|
A:CLA602
|
3.4
|
87.5
|
1.0
|
CHC
|
A:CLA602
|
3.5
|
79.4
|
1.0
|
CHD
|
A:CLA602
|
3.5
|
81.7
|
1.0
|
C7
|
A:CLA607
|
3.7
|
0.1
|
1.0
|
ND2
|
A:ASN183
|
3.9
|
73.5
|
1.0
|
C9
|
A:CLA607
|
4.1
|
99.1
|
1.0
|
C3D
|
A:CLA602
|
4.2
|
87.1
|
1.0
|
C8
|
A:CLA607
|
4.3
|
99.9
|
1.0
|
C2D
|
A:CLA602
|
4.3
|
85.4
|
1.0
|
C2B
|
A:CLA602
|
4.3
|
85.5
|
1.0
|
C3B
|
A:CLA602
|
4.3
|
83.8
|
1.0
|
C2C
|
A:CLA602
|
4.4
|
80.8
|
1.0
|
C3C
|
A:CLA602
|
4.4
|
81.5
|
1.0
|
C3A
|
A:CLA602
|
4.4
|
84.7
|
1.0
|
C2A
|
A:CLA602
|
4.4
|
86.2
|
1.0
|
CB
|
A:ASN183
|
4.4
|
76.4
|
1.0
|
C10
|
A:CLA607
|
4.5
|
99.8
|
1.0
|
C6
|
A:CLA607
|
4.5
|
0.5
|
1.0
|
C11
|
A:CLA607
|
4.9
|
0.8
|
1.0
|
C40
|
A:LUX501
|
4.9
|
64.2
|
1.0
|
CBB
|
A:CLA601
|
4.9
|
69.7
|
1.0
|
CBD
|
A:CLA602
|
4.9
|
89.8
|
1.0
|
|
Magnesium binding site 3 out
of 42 in 2bhw
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Magnesium Binding Sites List in 2bhw
Magnesium binding site 3 out
of 42 in the Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg603
b:86.3
occ:1.00
|
MG
|
A:CLA603
|
0.0
|
86.3
|
1.0
|
ND
|
A:CLA603
|
2.0
|
84.6
|
1.0
|
NB
|
A:CLA603
|
2.1
|
83.2
|
1.0
|
NC
|
A:CLA603
|
2.1
|
82.3
|
1.0
|
NA
|
A:CLA603
|
2.1
|
85.3
|
1.0
|
OE1
|
A:GLN197
|
2.4
|
83.3
|
1.0
|
C4D
|
A:CLA603
|
3.0
|
86.2
|
1.0
|
C1B
|
A:CLA603
|
3.1
|
80.0
|
1.0
|
C4A
|
A:CLA603
|
3.1
|
83.0
|
1.0
|
C1D
|
A:CLA603
|
3.1
|
80.7
|
1.0
|
C4C
|
A:CLA603
|
3.1
|
80.5
|
1.0
|
C4B
|
A:CLA603
|
3.1
|
81.8
|
1.0
|
C1C
|
A:CLA603
|
3.1
|
81.0
|
1.0
|
C1A
|
A:CLA603
|
3.2
|
86.2
|
1.0
|
CHB
|
A:CLA603
|
3.4
|
81.3
|
1.0
|
CD
|
A:GLN197
|
3.5
|
90.5
|
1.0
|
CHA
|
A:CLA603
|
3.5
|
86.1
|
1.0
|
CHD
|
A:CLA603
|
3.5
|
80.4
|
1.0
|
CHC
|
A:CLA603
|
3.5
|
81.1
|
1.0
|
O2A
|
A:CLA603
|
3.9
|
90.9
|
1.0
|
CG
|
A:GLN197
|
4.1
|
93.9
|
1.0
|
C2
|
A:CLA603
|
4.1
|
84.6
|
1.0
|
C3D
|
A:CLA603
|
4.2
|
84.6
|
1.0
|
C2B
|
A:CLA603
|
4.3
|
77.7
|
1.0
|
C2D
|
A:CLA603
|
4.3
|
81.4
|
1.0
|
C3C
|
A:CLA603
|
4.3
|
80.6
|
1.0
|
C3B
|
A:CLA603
|
4.3
|
77.2
|
1.0
|
C2C
|
A:CLA603
|
4.3
|
79.9
|
1.0
|
C3A
|
A:CLA603
|
4.4
|
81.9
|
1.0
|
C1
|
A:CLA603
|
4.4
|
86.0
|
1.0
|
C2A
|
A:CLA603
|
4.5
|
83.1
|
1.0
|
NE2
|
A:GLN197
|
4.5
|
78.3
|
1.0
|
C3
|
A:CLA603
|
4.5
|
85.9
|
1.0
|
CMD
|
A:CLA608
|
4.8
|
98.5
|
1.0
|
CGA
|
A:CLA603
|
4.8
|
90.3
|
1.0
|
C6
|
A:CLA603
|
4.8
|
85.6
|
1.0
|
CA
|
A:GLY193
|
4.9
|
75.7
|
1.0
|
CBD
|
A:CLA603
|
5.0
|
86.6
|
1.0
|
C5
|
A:CLA603
|
5.0
|
85.7
|
1.0
|
|
Magnesium binding site 4 out
of 42 in 2bhw
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Magnesium Binding Sites List in 2bhw
Magnesium binding site 4 out
of 42 in the Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg604
b:70.0
occ:1.00
|
MG
|
A:CLA604
|
0.0
|
70.0
|
1.0
|
ND
|
A:CLA604
|
2.0
|
68.1
|
1.0
|
NB
|
A:CLA604
|
2.1
|
66.1
|
1.0
|
NA
|
A:CLA604
|
2.1
|
65.0
|
1.0
|
NC
|
A:CLA604
|
2.1
|
64.6
|
1.0
|
OE2
|
A:GLU65
|
2.5
|
82.6
|
1.0
|
C4D
|
A:CLA604
|
2.9
|
70.2
|
1.0
|
C1B
|
A:CLA604
|
3.1
|
66.5
|
1.0
|
C4A
|
A:CLA604
|
3.1
|
64.7
|
1.0
|
C1D
|
A:CLA604
|
3.1
|
68.4
|
1.0
|
C1A
|
A:CLA604
|
3.1
|
68.1
|
1.0
|
C4B
|
A:CLA604
|
3.1
|
66.3
|
1.0
|
C4C
|
A:CLA604
|
3.1
|
67.5
|
1.0
|
C1C
|
A:CLA604
|
3.2
|
59.8
|
1.0
|
CHB
|
A:CLA604
|
3.4
|
65.9
|
1.0
|
CHA
|
A:CLA604
|
3.4
|
70.2
|
1.0
|
CHD
|
A:CLA604
|
3.5
|
70.0
|
1.0
|
CD
|
A:GLU65
|
3.5
|
87.6
|
1.0
|
C18
|
A:LUX502
|
3.5
|
74.4
|
1.0
|
CHC
|
A:CLA604
|
3.5
|
63.1
|
1.0
|
NE
|
A:ARG185
|
4.0
|
67.3
|
1.0
|
CG
|
A:GLU65
|
4.1
|
77.7
|
1.0
|
C3D
|
A:CLA604
|
4.2
|
68.0
|
1.0
|
NH2
|
A:ARG185
|
4.3
|
68.2
|
1.0
|
C2D
|
A:CLA604
|
4.3
|
66.4
|
1.0
|
C2B
|
A:CLA604
|
4.3
|
67.7
|
1.0
|
C3B
|
A:CLA604
|
4.4
|
69.5
|
1.0
|
C3A
|
A:CLA604
|
4.4
|
67.1
|
1.0
|
C3C
|
A:CLA604
|
4.4
|
67.4
|
1.0
|
CZ
|
A:ARG185
|
4.4
|
70.7
|
1.0
|
C2C
|
A:CLA604
|
4.4
|
61.6
|
1.0
|
OE1
|
A:GLU65
|
4.4
|
89.9
|
1.0
|
C2A
|
A:CLA604
|
4.4
|
70.0
|
1.0
|
CD
|
A:ARG185
|
4.8
|
65.2
|
1.0
|
CG
|
A:ARG185
|
4.8
|
69.6
|
1.0
|
C5
|
A:LUX502
|
4.9
|
83.8
|
1.0
|
CBD
|
A:CLA604
|
4.9
|
71.5
|
1.0
|
CB
|
A:GLU65
|
5.0
|
74.9
|
1.0
|
|
Magnesium binding site 5 out
of 42 in 2bhw
Go back to
Magnesium Binding Sites List in 2bhw
Magnesium binding site 5 out
of 42 in the Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg605
b:87.9
occ:1.00
|
MG
|
A:CLA605
|
0.0
|
87.9
|
1.0
|
ND
|
A:CLA605
|
2.0
|
87.7
|
1.0
|
NB
|
A:CLA605
|
2.1
|
85.1
|
1.0
|
NA
|
A:CLA605
|
2.1
|
86.8
|
1.0
|
NC
|
A:CLA605
|
2.1
|
85.6
|
1.0
|
NE2
|
A:HIS68
|
2.4
|
85.3
|
1.0
|
C4D
|
A:CLA605
|
3.0
|
86.1
|
1.0
|
C1B
|
A:CLA605
|
3.1
|
85.4
|
1.0
|
C4A
|
A:CLA605
|
3.1
|
84.9
|
1.0
|
C1D
|
A:CLA605
|
3.1
|
86.0
|
1.0
|
C4C
|
A:CLA605
|
3.1
|
84.1
|
1.0
|
C1C
|
A:CLA605
|
3.1
|
84.7
|
1.0
|
C4B
|
A:CLA605
|
3.1
|
83.5
|
1.0
|
C1A
|
A:CLA605
|
3.2
|
86.8
|
1.0
|
CD2
|
A:HIS68
|
3.3
|
85.2
|
1.0
|
CHB
|
A:CLA605
|
3.4
|
84.7
|
1.0
|
CE1
|
A:HIS68
|
3.5
|
85.0
|
1.0
|
CHA
|
A:CLA605
|
3.5
|
85.5
|
1.0
|
CHD
|
A:CLA605
|
3.5
|
85.5
|
1.0
|
CHC
|
A:CLA605
|
3.5
|
85.0
|
1.0
|
C8
|
A:CHL612
|
4.0
|
86.7
|
1.0
|
C10
|
A:CHL612
|
4.0
|
88.1
|
1.0
|
C3D
|
A:CLA605
|
4.2
|
84.8
|
1.0
|
C2B
|
A:CLA605
|
4.3
|
82.5
|
1.0
|
C2D
|
A:CLA605
|
4.3
|
84.4
|
1.0
|
C3C
|
A:CLA605
|
4.3
|
81.1
|
1.0
|
C3B
|
A:CLA605
|
4.3
|
82.8
|
1.0
|
C2C
|
A:CLA605
|
4.3
|
81.4
|
1.0
|
C3A
|
A:CLA605
|
4.4
|
85.2
|
1.0
|
C2A
|
A:CLA605
|
4.4
|
87.3
|
1.0
|
CG
|
A:HIS68
|
4.5
|
82.8
|
1.0
|
ND1
|
A:HIS68
|
4.5
|
84.8
|
1.0
|
C11
|
A:CHL612
|
4.8
|
92.1
|
1.0
|
C7
|
A:CHL612
|
4.9
|
88.9
|
1.0
|
C14
|
A:CHL610
|
4.9
|
0.6
|
1.0
|
C9
|
A:CHL612
|
4.9
|
87.5
|
1.0
|
CBD
|
A:CLA605
|
5.0
|
83.3
|
1.0
|
|
Magnesium binding site 6 out
of 42 in 2bhw
Go back to
Magnesium Binding Sites List in 2bhw
Magnesium binding site 6 out
of 42 in the Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg606
b:92.1
occ:1.00
|
MG
|
A:CLA606
|
0.0
|
92.1
|
1.0
|
ND
|
A:CLA606
|
2.0
|
90.1
|
1.0
|
NA
|
A:CLA606
|
2.1
|
91.0
|
1.0
|
NB
|
A:CLA606
|
2.1
|
89.5
|
1.0
|
NC
|
A:CLA606
|
2.1
|
90.2
|
1.0
|
C4D
|
A:CLA606
|
3.0
|
89.9
|
1.0
|
C4A
|
A:CLA606
|
3.0
|
90.1
|
1.0
|
C1B
|
A:CLA606
|
3.1
|
88.6
|
1.0
|
C1A
|
A:CLA606
|
3.1
|
91.7
|
1.0
|
C1D
|
A:CLA606
|
3.1
|
89.8
|
1.0
|
C1C
|
A:CLA606
|
3.1
|
88.0
|
1.0
|
C4C
|
A:CLA606
|
3.1
|
89.9
|
1.0
|
C4B
|
A:CLA606
|
3.1
|
88.4
|
1.0
|
CHB
|
A:CLA606
|
3.4
|
89.5
|
1.0
|
CHA
|
A:CLA606
|
3.4
|
90.3
|
1.0
|
CHD
|
A:CLA606
|
3.5
|
90.3
|
1.0
|
CHC
|
A:CLA606
|
3.5
|
89.3
|
1.0
|
O23
|
A:NEX503
|
3.6
|
93.6
|
1.0
|
C24
|
A:NEX503
|
4.0
|
89.6
|
1.0
|
C23
|
A:NEX503
|
4.2
|
78.7
|
1.0
|
C3D
|
A:CLA606
|
4.2
|
89.2
|
1.0
|
C2B
|
A:CLA606
|
4.3
|
84.8
|
1.0
|
C2D
|
A:CLA606
|
4.3
|
88.9
|
1.0
|
C3A
|
A:CLA606
|
4.3
|
91.7
|
1.0
|
C2C
|
A:CLA606
|
4.3
|
86.9
|
1.0
|
C3C
|
A:CLA606
|
4.3
|
91.0
|
1.0
|
C3B
|
A:CLA606
|
4.4
|
84.4
|
1.0
|
C2A
|
A:CLA606
|
4.4
|
93.6
|
1.0
|
C22
|
A:NEX503
|
4.4
|
80.2
|
1.0
|
O
|
A:GLY78
|
4.6
|
76.0
|
1.0
|
CA
|
A:GLY78
|
4.8
|
73.8
|
1.0
|
CG
|
A:PRO82
|
4.9
|
90.5
|
1.0
|
CBD
|
A:CLA606
|
4.9
|
88.6
|
1.0
|
|
Magnesium binding site 7 out
of 42 in 2bhw
Go back to
Magnesium Binding Sites List in 2bhw
Magnesium binding site 7 out
of 42 in the Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg607
b:90.3
occ:1.00
|
MG
|
A:CLA607
|
0.0
|
90.3
|
1.0
|
ND
|
A:CLA607
|
2.0
|
88.9
|
1.0
|
NB
|
A:CLA607
|
2.1
|
90.4
|
1.0
|
NC
|
A:CLA607
|
2.1
|
86.7
|
1.0
|
NA
|
A:CLA607
|
2.2
|
86.8
|
1.0
|
O4
|
A:LHG801
|
2.8
|
92.3
|
1.0
|
C4D
|
A:CLA607
|
3.0
|
87.7
|
1.0
|
C1B
|
A:CLA607
|
3.1
|
89.7
|
1.0
|
C1D
|
A:CLA607
|
3.1
|
88.7
|
1.0
|
C4C
|
A:CLA607
|
3.1
|
86.7
|
1.0
|
C1C
|
A:CLA607
|
3.1
|
86.1
|
1.0
|
C4B
|
A:CLA607
|
3.1
|
92.1
|
1.0
|
C4A
|
A:CLA607
|
3.2
|
85.3
|
1.0
|
C1A
|
A:CLA607
|
3.2
|
89.2
|
1.0
|
O6
|
A:LHG801
|
3.4
|
85.0
|
1.0
|
CHB
|
A:CLA607
|
3.5
|
87.3
|
1.0
|
CHA
|
A:CLA607
|
3.5
|
89.2
|
1.0
|
CHC
|
A:CLA607
|
3.5
|
88.9
|
1.0
|
CHD
|
A:CLA607
|
3.5
|
88.1
|
1.0
|
P
|
A:LHG801
|
3.6
|
90.3
|
1.0
|
O3
|
A:LHG801
|
4.2
|
97.5
|
1.0
|
C3D
|
A:CLA607
|
4.2
|
87.5
|
1.0
|
C2D
|
A:CLA607
|
4.3
|
87.9
|
1.0
|
C2B
|
A:CLA607
|
4.3
|
92.7
|
1.0
|
C3C
|
A:CLA607
|
4.3
|
85.3
|
1.0
|
C2C
|
A:CLA607
|
4.3
|
84.1
|
1.0
|
C3B
|
A:CLA607
|
4.4
|
96.2
|
1.0
|
CMD
|
A:CLA602
|
4.4
|
87.7
|
1.0
|
C3A
|
A:CLA607
|
4.5
|
83.6
|
1.0
|
C2A
|
A:CLA607
|
4.5
|
88.6
|
1.0
|
C3
|
A:LHG801
|
4.6
|
0.4
|
1.0
|
NZ
|
A:LYS182
|
4.7
|
83.4
|
1.0
|
C4
|
A:LHG801
|
4.7
|
83.5
|
1.0
|
CBA
|
A:CLA607
|
4.9
|
0.3
|
1.0
|
CBD
|
A:CLA607
|
5.0
|
88.2
|
1.0
|
|
Magnesium binding site 8 out
of 42 in 2bhw
Go back to
Magnesium Binding Sites List in 2bhw
Magnesium binding site 8 out
of 42 in the Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg608
b:99.3
occ:1.00
|
MG
|
A:CLA608
|
0.0
|
99.3
|
1.0
|
ND
|
A:CLA608
|
2.0
|
0.1
|
1.0
|
NA
|
A:CLA608
|
2.1
|
98.6
|
1.0
|
NB
|
A:CLA608
|
2.1
|
0.0
|
1.0
|
NC
|
A:CLA608
|
2.1
|
97.6
|
1.0
|
NE2
|
A:HIS212
|
2.6
|
86.0
|
1.0
|
C4D
|
A:CLA608
|
2.9
|
0.1
|
1.0
|
C4A
|
A:CLA608
|
3.1
|
97.4
|
1.0
|
C1A
|
A:CLA608
|
3.1
|
0.6
|
1.0
|
C1B
|
A:CLA608
|
3.1
|
99.1
|
1.0
|
C1D
|
A:CLA608
|
3.1
|
98.9
|
1.0
|
C4C
|
A:CLA608
|
3.1
|
96.1
|
1.0
|
C1C
|
A:CLA608
|
3.2
|
97.1
|
1.0
|
C4B
|
A:CLA608
|
3.2
|
98.4
|
1.0
|
CHA
|
A:CLA608
|
3.4
|
0.8
|
1.0
|
CHB
|
A:CLA608
|
3.4
|
98.3
|
1.0
|
C20
|
A:CLA603
|
3.5
|
0.7
|
1.0
|
CHD
|
A:CLA608
|
3.5
|
97.3
|
1.0
|
CHC
|
A:CLA608
|
3.5
|
97.8
|
1.0
|
CD2
|
A:HIS212
|
3.6
|
86.5
|
1.0
|
C18
|
A:CLA603
|
3.6
|
0.2
|
1.0
|
CE1
|
A:HIS212
|
3.6
|
85.5
|
1.0
|
C3D
|
A:CLA608
|
4.2
|
0.3
|
1.0
|
C2B
|
A:CLA608
|
4.3
|
98.7
|
1.0
|
C2D
|
A:CLA608
|
4.3
|
99.1
|
1.0
|
C17
|
A:CLA603
|
4.3
|
0.5
|
1.0
|
C3C
|
A:CLA608
|
4.3
|
94.7
|
1.0
|
C2C
|
A:CLA608
|
4.4
|
95.8
|
1.0
|
C2A
|
A:CLA608
|
4.4
|
99.7
|
1.0
|
C3B
|
A:CLA608
|
4.4
|
96.9
|
1.0
|
C3A
|
A:CLA608
|
4.4
|
94.7
|
1.0
|
ND1
|
A:HIS212
|
4.7
|
86.4
|
1.0
|
CG
|
A:HIS212
|
4.7
|
85.6
|
1.0
|
C19
|
A:CLA603
|
4.8
|
0.9
|
1.0
|
CBD
|
A:CLA608
|
4.9
|
0.6
|
1.0
|
CBA
|
A:CLA608
|
5.0
|
0.6
|
1.0
|
|
Magnesium binding site 9 out
of 42 in 2bhw
Go back to
Magnesium Binding Sites List in 2bhw
Magnesium binding site 9 out
of 42 in the Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg609
b:83.2
occ:1.00
|
MG
|
A:CHL609
|
0.0
|
83.2
|
1.0
|
O
|
A:TYR24
|
1.9
|
81.7
|
1.0
|
ND
|
A:CHL609
|
2.0
|
80.3
|
1.0
|
NA
|
A:CHL609
|
2.1
|
85.6
|
1.0
|
NB
|
A:CHL609
|
2.1
|
84.3
|
1.0
|
NC
|
A:CHL609
|
2.1
|
81.4
|
1.0
|
C4D
|
A:CHL609
|
2.9
|
81.8
|
1.0
|
C4A
|
A:CHL609
|
3.0
|
85.9
|
1.0
|
C1B
|
A:CHL609
|
3.1
|
85.8
|
1.0
|
C
|
A:TYR24
|
3.1
|
82.6
|
1.0
|
C1A
|
A:CHL609
|
3.1
|
86.2
|
1.0
|
C1D
|
A:CHL609
|
3.1
|
79.7
|
1.0
|
C4B
|
A:CHL609
|
3.1
|
83.2
|
1.0
|
C1C
|
A:CHL609
|
3.2
|
82.8
|
1.0
|
C4C
|
A:CHL609
|
3.2
|
81.0
|
1.0
|
CHB
|
A:CHL609
|
3.4
|
87.4
|
1.0
|
CHA
|
A:CHL609
|
3.4
|
83.8
|
1.0
|
CHD
|
A:CHL609
|
3.5
|
81.4
|
1.0
|
CHC
|
A:CHL609
|
3.5
|
83.2
|
1.0
|
N
|
A:LEU25
|
4.0
|
79.8
|
1.0
|
CA
|
A:TYR24
|
4.0
|
80.9
|
1.0
|
CA
|
A:LEU25
|
4.1
|
79.7
|
1.0
|
C3D
|
A:CHL609
|
4.2
|
79.7
|
1.0
|
C2D
|
A:CHL609
|
4.3
|
79.5
|
1.0
|
C2B
|
A:CHL609
|
4.3
|
82.4
|
1.0
|
C3A
|
A:CHL609
|
4.4
|
83.3
|
1.0
|
C3B
|
A:CHL609
|
4.4
|
83.1
|
1.0
|
C3C
|
A:CHL609
|
4.4
|
84.8
|
1.0
|
C2A
|
A:CHL609
|
4.4
|
85.2
|
1.0
|
C2C
|
A:CHL609
|
4.4
|
84.6
|
1.0
|
CD2
|
A:LEU25
|
4.5
|
85.7
|
1.0
|
C39
|
A:XAT504
|
4.5
|
76.2
|
1.0
|
CB
|
A:TYR24
|
4.5
|
82.1
|
1.0
|
C10
|
A:LHG801
|
4.7
|
86.4
|
1.0
|
C
|
A:LEU25
|
4.8
|
86.1
|
1.0
|
C8
|
A:LHG801
|
4.8
|
81.6
|
1.0
|
C36
|
A:XAT504
|
4.9
|
0.2
|
1.0
|
N
|
A:GLY26
|
4.9
|
85.9
|
1.0
|
C9
|
A:LHG801
|
4.9
|
84.5
|
1.0
|
C27
|
A:XAT504
|
4.9
|
0.7
|
1.0
|
CBD
|
A:CHL609
|
5.0
|
78.3
|
1.0
|
|
Magnesium binding site 10 out
of 42 in 2bhw
Go back to
Magnesium Binding Sites List in 2bhw
Magnesium binding site 10 out
of 42 in the Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Pea Light-Harvesting Complex II at 2.5 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg610
b:74.3
occ:1.00
|
MG
|
A:CHL610
|
0.0
|
74.3
|
1.0
|
ND
|
A:CHL610
|
2.0
|
71.9
|
1.0
|
NA
|
A:CHL610
|
2.1
|
70.5
|
1.0
|
NB
|
A:CHL610
|
2.1
|
69.0
|
1.0
|
NC
|
A:CHL610
|
2.1
|
70.4
|
1.0
|
O
|
A:HOH2009
|
2.7
|
86.7
|
1.0
|
C4D
|
A:CHL610
|
2.9
|
73.6
|
1.0
|
C4A
|
A:CHL610
|
3.0
|
71.6
|
1.0
|
C1B
|
A:CHL610
|
3.0
|
69.5
|
1.0
|
C1D
|
A:CHL610
|
3.1
|
71.6
|
1.0
|
C1A
|
A:CHL610
|
3.1
|
73.7
|
1.0
|
C4B
|
A:CHL610
|
3.1
|
65.8
|
1.0
|
C4C
|
A:CHL610
|
3.1
|
70.8
|
1.0
|
C1C
|
A:CHL610
|
3.2
|
67.7
|
1.0
|
CHB
|
A:CHL610
|
3.4
|
70.9
|
1.0
|
CHA
|
A:CHL610
|
3.4
|
75.3
|
1.0
|
CHD
|
A:CHL610
|
3.5
|
71.9
|
1.0
|
CHC
|
A:CHL610
|
3.5
|
66.5
|
1.0
|
OMC
|
A:CHL613
|
4.1
|
83.9
|
1.0
|
C3D
|
A:CHL610
|
4.2
|
74.0
|
1.0
|
CMC
|
A:CHL613
|
4.3
|
83.1
|
1.0
|
C15
|
B:CHL609
|
4.3
|
89.7
|
1.0
|
C2B
|
A:CHL610
|
4.3
|
69.6
|
1.0
|
C2D
|
A:CHL610
|
4.3
|
73.1
|
1.0
|
C3B
|
A:CHL610
|
4.3
|
67.8
|
1.0
|
C3A
|
A:CHL610
|
4.4
|
73.5
|
1.0
|
C3C
|
A:CHL610
|
4.4
|
70.0
|
1.0
|
C2C
|
A:CHL610
|
4.4
|
66.2
|
1.0
|
C18
|
B:XAT504
|
4.4
|
89.2
|
1.0
|
C17
|
B:CHL609
|
4.4
|
90.8
|
1.0
|
C2A
|
A:CHL610
|
4.4
|
75.5
|
1.0
|
C16
|
B:CHL609
|
4.6
|
91.6
|
1.0
|
CBD
|
A:CHL610
|
4.9
|
80.7
|
1.0
|
|
Reference:
J.Standfuss,
A.C.Terwisscha Van Scheltinga,
M.Lamborghini,
W.Kuehlbrandt.
Mechanisms of Photoprotection and Nonphotochemical Quenching in Pea Light-Harvesting Complex at 2.5 A Resolution. Embo J. V. 24 919 2005.
ISSN: ISSN 0261-4189
PubMed: 15719016
DOI: 10.1038/SJ.EMBOJ.7600585
Page generated: Tue Aug 13 21:51:46 2024
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