Magnesium in PDB 2bph: Structure of Murine Dectin-1

The structure of Structure of Murine Dectin-1, PDB code: 2bph was solved by J.Brown, C.A.O'callaghan, A.S.J.Marshall, R.J.C.Gilbert, C.Siebold, S.Gordon, G.D.Brown, E.Y.Jones, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.20
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	57.199, 57.199, 72.996, 90.00, 90.00, 120.00
R / Rfree (%)	19.5 / 25.4

The binding sites of Magnesium atom in the Structure of Murine Dectin-1 (pdb code 2bph). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Murine Dectin-1, PDB code: 2bph:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Murine Dectin-1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Murine Dectin-1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1245 b:17.9 occ:1.00 O A:LYS156 2.2 33.3 1.0 OE1 A:GLU241 2.3 35.0 1.0 OD2 A:ASP158 2.3 32.1 1.0 OE1 A:GLU162 2.3 34.6 1.0 OE2 A:GLU162 2.7 32.5 1.0 O A:HOH2077 2.8 36.5 1.0 OE2 A:GLU241 2.8 35.2 1.0 CD A:GLU241 2.9 34.8 1.0 CD A:GLU162 2.9 32.8 1.0 C A:LYS156 3.4 32.6 1.0 CG A:ASP158 3.5 33.9 1.0 N A:ASP158 4.1 32.3 1.0 CA A:LYS156 4.2 32.5 1.0 CB A:LYS156 4.2 32.4 1.0 CB A:ASP158 4.3 32.4 1.0 CG A:GLU241 4.3 34.0 1.0 CG A:GLU162 4.4 32.9 1.0 N A:ILE157 4.4 33.3 1.0 OD1 A:ASP158 4.4 36.2 1.0 N A:LYS156 4.4 32.0 1.0 OH A:TYR131 4.4 32.1 1.0 CA A:ILE157 4.5 32.6 1.0 OE2 A:GLU243 4.5 40.1 1.0 O A:HOH2012 4.5 32.2 1.0 CG A:LYS156 4.7 32.0 1.0 CD1 A:LEU155 4.7 26.9 1.0 C A:ILE157 4.8 32.1 1.0 OG A:SER129 4.8 32.7 1.0 CA A:ASP158 4.9 32.1 1.0

Magnesium binding site 2 out of 2 in the Structure of Murine Dectin-1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Murine Dectin-1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1245 b:13.4 occ:1.00 OD2 B:ASP158 2.2 32.2 1.0 O B:HOH2091 2.2 27.5 1.0 OE1 B:GLU162 2.2 35.2 1.0 O B:LYS156 2.3 32.4 1.0 OE1 B:GLU241 2.3 31.0 1.0 OE2 B:GLU241 2.7 30.8 1.0 O B:HOH2088 2.7 30.6 1.0 OE2 B:GLU162 2.8 34.0 1.0 CD B:GLU162 2.8 35.8 1.0 CD B:GLU241 2.8 32.0 1.0 CG B:ASP158 3.4 34.4 1.0 C B:LYS156 3.4 31.9 1.0 CB B:LYS156 4.0 31.7 1.0 CA B:LYS156 4.2 31.9 1.0 N B:ASP158 4.2 32.1 1.0 OD1 B:ASP158 4.2 37.3 1.0 O B:HOH2014 4.3 42.4 1.0 OE1 B:GLU243 4.3 39.8 1.0 CG B:GLU162 4.3 34.0 1.0 CB B:ASP158 4.3 33.1 1.0 CG B:GLU241 4.4 31.9 1.0 N B:ILE157 4.4 31.7 1.0 O B:HOH2012 4.4 37.5 1.0 OH B:TYR131 4.4 30.6 1.0 N B:LYS156 4.5 32.4 1.0 CA B:ILE157 4.6 32.0 1.0 CG B:LYS156 4.7 31.1 1.0 O B:HOH2025 4.7 39.8 1.0 OG B:SER129 4.8 35.3 1.0 CD1 B:LEU155 4.8 32.2 1.0 C B:ILE157 4.8 32.2 1.0 CA B:ASP158 4.9 32.1 1.0 CE2 B:TYR131 5.0 27.7 1.0

J.Brown, C.A.O'callaghan, A.S.J.Marshall, R.J.C.Gilbert, C.Siebold, S.Gordon, G.D.Brown, E.Y.Jones. Structure of the Fungal Beta-Glucan-Binding Immune Receptor Dectin-1: Implications For Function. Protein Sci. V. 16 1042 2007.
ISSN: ISSN 0961-8368
PubMed: 17473009
DOI: 10.1110/PS.072791207