Magnesium in PDB 2c7e: Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)

The structure of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) also contains other interesting chemical elements:

Potassium

(K)

7 atoms

The binding sites of Magnesium atom in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) (pdb code 2c7e). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047), PDB code: 2c7e:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg550 b:31.5 occ:1.00 O A:HOH2006 1.9 50.8 1.0 O3G A:ATP551 2.2 42.2 1.0 OD1 A:ASP87 2.2 52.9 1.0 O A:HOH2005 2.3 45.0 1.0 O2A A:ATP551 2.4 36.8 1.0 O1B A:ATP551 2.4 35.9 1.0 CG A:ASP87 3.3 50.0 1.0 PB A:ATP551 3.5 36.3 1.0 PG A:ATP551 3.5 44.1 1.0 PA A:ATP551 3.6 36.6 1.0 OD2 A:ASP87 3.6 52.1 1.0 O3A A:ATP551 3.8 36.9 1.0 O3B A:ATP551 3.9 38.8 1.0 O2G A:ATP551 4.0 39.8 1.0 O A:HOH2004 4.1 50.1 1.0 N A:GLY88 4.4 41.8 1.0 C5' A:ATP551 4.5 36.8 1.0 O5' A:ATP551 4.5 35.1 1.0 CB A:ASP87 4.6 46.1 1.0 O1G A:ATP551 4.7 41.0 1.0 O1A A:ATP551 4.7 37.3 1.0 O2B A:ATP551 4.8 35.5 1.0 CA A:ASP87 4.9 43.8 1.0

Magnesium binding site 2 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg550 b:31.5 occ:1.00 O A:HOH2012 1.9 50.8 1.0 O3G B:ATP551 2.2 42.2 1.0 OD1 B:ASP87 2.2 52.9 1.0 O A:HOH2011 2.3 45.0 1.0 O2A B:ATP551 2.4 36.8 1.0 O1B B:ATP551 2.4 35.9 1.0 CG B:ASP87 3.3 50.0 1.0 PB B:ATP551 3.5 36.3 1.0 PG B:ATP551 3.5 44.1 1.0 PA B:ATP551 3.6 36.6 1.0 OD2 B:ASP87 3.6 52.1 1.0 O3A B:ATP551 3.8 36.9 1.0 O3B B:ATP551 3.9 38.8 1.0 O2G B:ATP551 4.0 39.8 1.0 O A:HOH2010 4.1 50.1 1.0 N B:GLY88 4.4 41.8 1.0 C5' B:ATP551 4.5 36.8 1.0 O5' B:ATP551 4.5 35.1 1.0 CB B:ASP87 4.6 46.1 1.0 O1G B:ATP551 4.7 41.0 1.0 O1A B:ATP551 4.7 37.3 1.0 O2B B:ATP551 4.8 35.5 1.0 CA B:ASP87 4.9 43.8 1.0

Magnesium binding site 3 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg550 b:31.5 occ:1.00 O A:HOH2018 2.0 50.8 1.0 O3G C:ATP551 2.2 42.2 1.0 OD1 C:ASP87 2.2 52.9 1.0 O A:HOH2017 2.3 45.0 1.0 O2A C:ATP551 2.4 36.8 1.0 O1B C:ATP551 2.4 35.9 1.0 CG C:ASP87 3.3 50.0 1.0 PB C:ATP551 3.5 36.3 1.0 PG C:ATP551 3.5 44.1 1.0 PA C:ATP551 3.6 36.6 1.0 OD2 C:ASP87 3.6 52.1 1.0 O3A C:ATP551 3.8 36.9 1.0 O3B C:ATP551 3.9 38.8 1.0 O2G C:ATP551 4.0 39.8 1.0 O A:HOH2016 4.1 50.1 1.0 N C:GLY88 4.4 41.8 1.0 C5' C:ATP551 4.5 36.8 1.0 O5' C:ATP551 4.5 35.1 1.0 CB C:ASP87 4.6 46.1 1.0 O1G C:ATP551 4.7 41.0 1.0 O1A C:ATP551 4.7 37.3 1.0 O2B C:ATP551 4.8 35.5 1.0 CA C:ASP87 4.9 43.8 1.0

Magnesium binding site 4 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg550 b:31.5 occ:1.00 O A:HOH2024 2.0 50.8 1.0 O3G D:ATP551 2.2 42.2 1.0 OD1 D:ASP87 2.2 52.9 1.0 O A:HOH2023 2.3 45.0 1.0 O2A D:ATP551 2.4 36.8 1.0 O1B D:ATP551 2.4 35.9 1.0 CG D:ASP87 3.3 50.0 1.0 PB D:ATP551 3.5 36.3 1.0 PG D:ATP551 3.5 44.1 1.0 PA D:ATP551 3.6 36.6 1.0 OD2 D:ASP87 3.6 52.1 1.0 O3A D:ATP551 3.8 36.9 1.0 O3B D:ATP551 3.9 38.8 1.0 O2G D:ATP551 4.0 39.8 1.0 O A:HOH2022 4.1 50.1 1.0 N D:GLY88 4.4 41.8 1.0 C5' D:ATP551 4.5 36.8 1.0 O5' D:ATP551 4.5 35.1 1.0 CB D:ASP87 4.6 46.1 1.0 O1G D:ATP551 4.7 41.0 1.0 O1A D:ATP551 4.7 37.3 1.0 O2B D:ATP551 4.8 35.5 1.0 CA D:ASP87 4.9 43.8 1.0

Magnesium binding site 5 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg550 b:31.5 occ:1.00 O A:HOH2030 1.9 50.8 1.0 O3G E:ATP551 2.2 42.2 1.0 OD1 E:ASP87 2.2 52.9 1.0 O A:HOH2029 2.3 45.0 1.0 O2A E:ATP551 2.4 36.8 1.0 O1B E:ATP551 2.4 35.9 1.0 CG E:ASP87 3.3 50.0 1.0 PB E:ATP551 3.5 36.3 1.0 PG E:ATP551 3.5 44.1 1.0 PA E:ATP551 3.6 36.6 1.0 OD2 E:ASP87 3.6 52.1 1.0 O3A E:ATP551 3.8 36.9 1.0 O3B E:ATP551 3.9 38.8 1.0 O2G E:ATP551 4.0 39.8 1.0 O A:HOH2028 4.1 50.1 1.0 N E:GLY88 4.4 41.8 1.0 C5' E:ATP551 4.5 36.8 1.0 O5' E:ATP551 4.5 35.1 1.0 CB E:ASP87 4.6 46.1 1.0 O1G E:ATP551 4.7 41.0 1.0 O1A E:ATP551 4.7 37.3 1.0 O2B E:ATP551 4.8 35.5 1.0 CA E:ASP87 4.9 43.8 1.0

Magnesium binding site 6 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg550 b:31.5 occ:1.00 O A:HOH2036 1.9 50.8 1.0 O3G F:ATP551 2.2 42.2 1.0 OD1 F:ASP87 2.2 52.9 1.0 O A:HOH2035 2.3 45.0 1.0 O2A F:ATP551 2.4 36.8 1.0 O1B F:ATP551 2.4 35.9 1.0 CG F:ASP87 3.3 50.0 1.0 PB F:ATP551 3.5 36.3 1.0 PG F:ATP551 3.5 44.1 1.0 PA F:ATP551 3.6 36.6 1.0 OD2 F:ASP87 3.6 52.1 1.0 O3A F:ATP551 3.8 36.9 1.0 O3B F:ATP551 3.9 38.8 1.0 O2G F:ATP551 4.0 39.8 1.0 O A:HOH2034 4.1 50.1 1.0 N F:GLY88 4.4 41.8 1.0 C5' F:ATP551 4.5 36.8 1.0 O5' F:ATP551 4.5 35.1 1.0 CB F:ASP87 4.6 46.1 1.0 O1G F:ATP551 4.7 41.0 1.0 O1A F:ATP551 4.7 37.3 1.0 O2B F:ATP551 4.8 35.5 1.0 CA F:ASP87 4.9 43.8 1.0

Magnesium binding site 7 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg550 b:31.5 occ:1.00 O A:HOH2042 1.9 50.8 1.0 O3G G:ATP551 2.2 42.2 1.0 OD1 G:ASP87 2.2 52.9 1.0 O A:HOH2041 2.3 45.0 1.0 O2A G:ATP551 2.4 36.8 1.0 O1B G:ATP551 2.4 35.9 1.0 CG G:ASP87 3.3 50.0 1.0 PB G:ATP551 3.5 36.3 1.0 PG G:ATP551 3.5 44.1 1.0 PA G:ATP551 3.6 36.6 1.0 OD2 G:ASP87 3.6 52.1 1.0 O3A G:ATP551 3.8 36.9 1.0 O3B G:ATP551 3.9 38.8 1.0 O2G G:ATP551 4.0 39.8 1.0 O A:HOH2040 4.1 50.1 1.0 N G:GLY88 4.4 41.8 1.0 C5' G:ATP551 4.5 36.8 1.0 O5' G:ATP551 4.5 35.1 1.0 CB G:ASP87 4.6 46.1 1.0 O1G G:ATP551 4.7 41.0 1.0 O1A G:ATP551 4.7 37.3 1.0 O2B G:ATP551 4.8 35.5 1.0 CA G:ASP87 4.9 43.8 1.0

N.A.Ranson, G.W.Farr, A.M.Roseman, B.Gowen, W.A.Fenton, A.L.Horwich, H.R.Saibil. Atp-Bound States of Groel Captured By Cryo-Electron Microscopy Cell(Cambridge,Mass.) V. 107 869 2001.
ISSN: ISSN 0092-8674
PubMed: 11779463
DOI: 10.1016/S0092-8674(01)00617-1